Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 30609 | 0.67 | 0.566374 |
Target: 5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3' miRNA: 3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 16696 | 0.67 | 0.554454 |
Target: 5'- -aGgGCCgUGACCACGuaGCGguAGGu -3' miRNA: 3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 25787 | 0.67 | 0.554454 |
Target: 5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3' miRNA: 3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 32931 | 0.67 | 0.543682 |
Target: 5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3' miRNA: 3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 23555 | 0.67 | 0.541536 |
Target: 5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3' miRNA: 3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 1307 | 0.67 | 0.532979 |
Target: 5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3' miRNA: 3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 26263 | 0.67 | 0.529783 |
Target: 5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3' miRNA: 3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 34616 | 0.67 | 0.522353 |
Target: 5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3' miRNA: 3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 489 | 0.67 | 0.522353 |
Target: 5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3' miRNA: 3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22925 | 0.66 | 0.576176 |
Target: 5'- -aGCACaa-GACCACGGUuCGCAGcGGc -3' miRNA: 3'- gaUGUGgagCUGGUGCCGcGCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 23231 | 0.66 | 0.609085 |
Target: 5'- ---gGCCUCGGCCACcgacCGCGCcucgcuGGGg -3' miRNA: 3'- gaugUGGAGCUGGUGcc--GCGCGu-----UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 25472 | 0.66 | 0.609085 |
Target: 5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3' miRNA: 3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29030 | 0.66 | 0.619004 |
Target: 5'- -cGCGCUUCGGCCAggucgauacccacCGGCG-GCucguAGGc -3' miRNA: 3'- gaUGUGGAGCUGGU-------------GCCGCgCGu---UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 39983 | 0.66 | 0.620107 |
Target: 5'- -aGCGCCUgGGCCGCaguuucGGCGCcuucaaauCGAGGu -3' miRNA: 3'- gaUGUGGAgCUGGUG------CCGCGc-------GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 40833 | 0.66 | 0.619004 |
Target: 5'- -aACGCaCUCGACCACcaggaaGGCgGCGgccacuaCAAGGa -3' miRNA: 3'- gaUGUG-GAGCUGGUG------CCG-CGC-------GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 36592 | 0.66 | 0.598083 |
Target: 5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3' miRNA: 3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 16406 | 0.66 | 0.587111 |
Target: 5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3' miRNA: 3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 626 | 0.66 | 0.624519 |
Target: 5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3' miRNA: 3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 11100 | 0.66 | 0.583826 |
Target: 5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3' miRNA: 3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 14810 | 0.66 | 0.609085 |
Target: 5'- cCUGCACCUCG---GCGGCGCuGCc--- -3' miRNA: 3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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