Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 10743 | 0.68 | 0.480738 |
Target: 5'- uUGCugCUCG-CCAagGGCGCGCucGa -3' miRNA: 3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 7353 | 0.68 | 0.480738 |
Target: 5'- -cGCgGCCUCGACCuCGGCGUcguucguccaGCGGcGGg -3' miRNA: 3'- gaUG-UGGAGCUGGuGCCGCG----------CGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 6381 | 0.68 | 0.480738 |
Target: 5'- uUACACCaggUCGGCCgccGCGGCGCcCucGGu -3' miRNA: 3'- gAUGUGG---AGCUGG---UGCCGCGcGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 2778 | 0.68 | 0.490996 |
Target: 5'- -gACACCUCGACguugCGCaGGUGCGCc--- -3' miRNA: 3'- gaUGUGGAGCUG----GUG-CCGCGCGuucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8688 | 0.68 | 0.490996 |
Target: 5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3' miRNA: 3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 40210 | 0.68 | 0.490996 |
Target: 5'- uUAUACCgCGA-CAUGGaGCGCGAGGc -3' miRNA: 3'- gAUGUGGaGCUgGUGCCgCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 9974 | 0.68 | 0.501356 |
Target: 5'- --cCACCUCGcAgUAgGGgGCGUAGGGg -3' miRNA: 3'- gauGUGGAGC-UgGUgCCgCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 19539 | 0.68 | 0.501356 |
Target: 5'- gUugGCCUCGAUgACGGUcauGuCGuCGAGGa -3' miRNA: 3'- gAugUGGAGCUGgUGCCG---C-GC-GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 14147 | 0.67 | 0.507617 |
Target: 5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3' miRNA: 3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 34178 | 0.67 | 0.51181 |
Target: 5'- -aACACCUgGGCCGCuugaaGCGCAAGc -3' miRNA: 3'- gaUGUGGAgCUGGUGccg--CGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 34616 | 0.67 | 0.522353 |
Target: 5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3' miRNA: 3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 489 | 0.67 | 0.522353 |
Target: 5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3' miRNA: 3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 12877 | 0.67 | 0.526594 |
Target: 5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3' miRNA: 3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 26263 | 0.67 | 0.529783 |
Target: 5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3' miRNA: 3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22431 | 0.67 | 0.529783 |
Target: 5'- -cACGCCUUGACgGCGGCGgacuCGUccaguucgggaaucGAGGu -3' miRNA: 3'- gaUGUGGAGCUGgUGCCGC----GCG--------------UUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 41810 | 0.67 | 0.532979 |
Target: 5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3' miRNA: 3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22313 | 0.67 | 0.532979 |
Target: 5'- -gGCA-UUCGACgACGGUGUGCuGGGc -3' miRNA: 3'- gaUGUgGAGCUGgUGCCGCGCGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 1307 | 0.67 | 0.532979 |
Target: 5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3' miRNA: 3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 23555 | 0.67 | 0.541536 |
Target: 5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3' miRNA: 3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 32931 | 0.67 | 0.543682 |
Target: 5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3' miRNA: 3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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