Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 32931 | 0.67 | 0.543682 |
Target: 5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3' miRNA: 3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29422 | 0.67 | 0.543682 |
Target: 5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3' miRNA: 3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 37826 | 0.67 | 0.554454 |
Target: 5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3' miRNA: 3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 27487 | 0.67 | 0.554454 |
Target: 5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3' miRNA: 3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 25787 | 0.67 | 0.554454 |
Target: 5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3' miRNA: 3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 16696 | 0.67 | 0.554454 |
Target: 5'- -aGgGCCgUGACCACGuaGCGguAGGu -3' miRNA: 3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22541 | 0.67 | 0.565288 |
Target: 5'- ---uGCCaCGGCCAagaaGGCGCGCGAc- -3' miRNA: 3'- gaugUGGaGCUGGUg---CCGCGCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28745 | 0.67 | 0.565288 |
Target: 5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3' miRNA: 3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 30609 | 0.67 | 0.566374 |
Target: 5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3' miRNA: 3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22925 | 0.66 | 0.576176 |
Target: 5'- -aGCACaa-GACCACGGUuCGCAGcGGc -3' miRNA: 3'- gaUGUGgagCUGGUGCCGcGCGUU-CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28223 | 0.66 | 0.576176 |
Target: 5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3' miRNA: 3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 15267 | 0.66 | 0.576176 |
Target: 5'- -gGCAUC-CGcgUGCGGCGCGUggGGg -3' miRNA: 3'- gaUGUGGaGCugGUGCCGCGCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 11100 | 0.66 | 0.583826 |
Target: 5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3' miRNA: 3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 19000 | 0.66 | 0.586015 |
Target: 5'- -cGCAUCcCGGCCGgcgucgcacugacCGGCGCGCucaucAAGGu -3' miRNA: 3'- gaUGUGGaGCUGGU-------------GCCGCGCG-----UUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 16406 | 0.66 | 0.587111 |
Target: 5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3' miRNA: 3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 18286 | 0.66 | 0.587111 |
Target: 5'- -gGCGCUg-GGCCA-GGCGCGCAGccGGc -3' miRNA: 3'- gaUGUGGagCUGGUgCCGCGCGUU--CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 35793 | 0.66 | 0.587111 |
Target: 5'- -gACACUcCGGCCAa-GCGCGCGAa- -3' miRNA: 3'- gaUGUGGaGCUGGUgcCGCGCGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 36592 | 0.66 | 0.598083 |
Target: 5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3' miRNA: 3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 14810 | 0.66 | 0.609085 |
Target: 5'- cCUGCACCUCG---GCGGCGCuGCc--- -3' miRNA: 3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 25472 | 0.66 | 0.609085 |
Target: 5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3' miRNA: 3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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