miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 30407 0.71 0.341573
Target:  5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3'
miRNA:   3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5'
26450 3' -56.4 NC_005357.1 + 13610 0.71 0.333392
Target:  5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3'
miRNA:   3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 8619 0.71 0.325355
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 8727 0.71 0.325355
Target:  5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 27504 0.71 0.325355
Target:  5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3'
miRNA:   3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 26972 0.71 0.317464
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5'
26450 3' -56.4 NC_005357.1 + 7960 0.71 0.309717
Target:  5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3'
miRNA:   3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5'
26450 3' -56.4 NC_005357.1 + 9721 0.71 0.302115
Target:  5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3'
miRNA:   3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 13874 0.71 0.302115
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 7232 0.72 0.294658
Target:  5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3'
miRNA:   3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 4603 0.72 0.294658
Target:  5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3'
miRNA:   3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 41062 0.73 0.240125
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 15812 0.73 0.240125
Target:  5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3'
miRNA:   3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 22487 0.73 0.233934
Target:  5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3'
miRNA:   3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 28043 0.73 0.232103
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 8981 0.73 0.227878
Target:  5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3'
miRNA:   3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 34350 0.74 0.224309
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26450 3' -56.4 NC_005357.1 + 8058 0.74 0.224309
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 36679 0.74 0.221955
Target:  5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3'
miRNA:   3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 5607 0.74 0.204969
Target:  5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3'
miRNA:   3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.