Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26450 | 3' | -56.4 | NC_005357.1 | + | 36947 | 0.74 | 0.20171 |
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Target: 5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3' miRNA: 3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 37826 | 0.67 | 0.554454 |
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Target: 5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3' miRNA: 3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 38261 | 1.1 | 0.000552 |
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Target: 5'- gCUACACCUCGACCACGGCGCGCAAGGu -3' miRNA: 3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 39983 | 0.66 | 0.620107 |
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Target: 5'- -aGCGCCUgGGCCGCaguuucGGCGCcuucaaauCGAGGu -3' miRNA: 3'- gaUGUGGAgCUGGUG------CCGCGc-------GUUCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 40210 | 0.68 | 0.490996 |
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Target: 5'- uUAUACCgCGA-CAUGGaGCGCGAGGc -3' miRNA: 3'- gAUGUGGaGCUgGUGCCgCGCGUUCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 40833 | 0.66 | 0.619004 |
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Target: 5'- -aACGCaCUCGACCACcaggaaGGCgGCGgccacuaCAAGGa -3' miRNA: 3'- gaUGUG-GAGCUGGUG------CCG-CGC-------GUUCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 41062 | 0.73 | 0.240125 |
|
Target: 5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3' miRNA: 3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5' |
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| 26450 | 3' | -56.4 | NC_005357.1 | + | 41810 | 0.67 | 0.532979 |
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Target: 5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3' miRNA: 3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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