miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 1307 0.67 0.532979
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 26263 0.67 0.529783
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 4742 0.69 0.431115
Target:  5'- -cGCGauguUCUCGGCCACGGC-CGCGAu- -3'
miRNA:   3'- gaUGU----GGAGCUGGUGCCGcGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 10686 0.69 0.431115
Target:  5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3'
miRNA:   3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 24103 0.69 0.440802
Target:  5'- -gGCACCcCGcuaCAUGcGCGCGUAGGGg -3'
miRNA:   3'- gaUGUGGaGCug-GUGC-CGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 29382 0.69 0.440802
Target:  5'- -aGC-CCUCgGACU-CGGCGCGguAGGc -3'
miRNA:   3'- gaUGuGGAG-CUGGuGCCGCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 8861 0.68 0.450612
Target:  5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3'
miRNA:   3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 29759 0.68 0.450612
Target:  5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3'
miRNA:   3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 34344 0.68 0.450612
Target:  5'- gUACA--UCGACUACGuGCGCGCcuuGGGc -3'
miRNA:   3'- gAUGUggAGCUGGUGC-CGCGCGu--UCC- -5'
26450 3' -56.4 NC_005357.1 + 23555 0.67 0.541536
Target:  5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 32931 0.67 0.543682
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 25472 0.66 0.609085
Target:  5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3'
miRNA:   3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 23231 0.66 0.609085
Target:  5'- ---gGCCUCGGCCACcgacCGCGCcucgcuGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUGcc--GCGCGu-----UCC- -5'
26450 3' -56.4 NC_005357.1 + 14810 0.66 0.609085
Target:  5'- cCUGCACCUCG---GCGGCGCuGCc--- -3'
miRNA:   3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5'
26450 3' -56.4 NC_005357.1 + 36592 0.66 0.598083
Target:  5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3'
miRNA:   3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 16406 0.66 0.587111
Target:  5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3'
miRNA:   3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 11100 0.66 0.583826
Target:  5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3'
miRNA:   3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 30609 0.67 0.566374
Target:  5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3'
miRNA:   3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5'
26450 3' -56.4 NC_005357.1 + 16696 0.67 0.554454
Target:  5'- -aGgGCCgUGACCACGuaGCGguAGGu -3'
miRNA:   3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 25787 0.67 0.554454
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.