miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 32931 0.67 0.543682
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 25787 0.67 0.554454
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 16696 0.67 0.554454
Target:  5'- -aGgGCCgUGACCACGuaGCGguAGGu -3'
miRNA:   3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 30609 0.67 0.566374
Target:  5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3'
miRNA:   3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5'
26450 3' -56.4 NC_005357.1 + 28223 0.66 0.576176
Target:  5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3'
miRNA:   3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 11100 0.66 0.583826
Target:  5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3'
miRNA:   3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 16406 0.66 0.587111
Target:  5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3'
miRNA:   3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 36592 0.66 0.598083
Target:  5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3'
miRNA:   3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 1307 0.67 0.532979
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 26263 0.67 0.529783
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 22431 0.67 0.529783
Target:  5'- -cACGCCUUGACgGCGGCGgacuCGUccaguucgggaaucGAGGu -3'
miRNA:   3'- gaUGUGGAGCUGgUGCCGC----GCG--------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 28554 0.68 0.460541
Target:  5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3'
miRNA:   3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 10743 0.68 0.480738
Target:  5'- uUGCugCUCG-CCAagGGCGCGCucGa -3'
miRNA:   3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5'
26450 3' -56.4 NC_005357.1 + 24626 0.68 0.480738
Target:  5'- -gGCACgUCGAaccaCAUGGCGUGCcggcGGGc -3'
miRNA:   3'- gaUGUGgAGCUg---GUGCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 28673 0.68 0.480738
Target:  5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3'
miRNA:   3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 9326 0.68 0.480738
Target:  5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3'
miRNA:   3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 8688 0.68 0.490996
Target:  5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 19539 0.68 0.501356
Target:  5'- gUugGCCUCGAUgACGGUcauGuCGuCGAGGa -3'
miRNA:   3'- gAugUGGAGCUGgUGCCG---C-GC-GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 489 0.67 0.522353
Target:  5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3'
miRNA:   3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5'
26450 3' -56.4 NC_005357.1 + 34616 0.67 0.522353
Target:  5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3'
miRNA:   3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.