miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 38261 1.1 0.000552
Target:  5'- gCUACACCUCGACCACGGCGCGCAAGGu -3'
miRNA:   3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 20307 0.8 0.079397
Target:  5'- --cCugUUCGACCGCGGCGCGCu-GGa -3'
miRNA:   3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 6706 0.79 0.097019
Target:  5'- -cACACCUUGuCCugGGCGCGCAu-- -3'
miRNA:   3'- gaUGUGGAGCuGGugCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 228 0.79 0.102699
Target:  5'- -cGCACCUCGGCauUGGCGCGCuGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 14661 0.76 0.143851
Target:  5'- uUGCACCUUGGCCugGGUGCGgGu-- -3'
miRNA:   3'- gAUGUGGAGCUGGugCCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 24161 0.76 0.160634
Target:  5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3'
miRNA:   3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5'
26450 3' -56.4 NC_005357.1 + 13153 0.75 0.174359
Target:  5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3'
miRNA:   3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 36947 0.74 0.20171
Target:  5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3'
miRNA:   3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5'
26450 3' -56.4 NC_005357.1 + 5607 0.74 0.204969
Target:  5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3'
miRNA:   3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 36679 0.74 0.221955
Target:  5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3'
miRNA:   3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 8058 0.74 0.224309
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 34350 0.74 0.224309
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26450 3' -56.4 NC_005357.1 + 8981 0.73 0.227878
Target:  5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3'
miRNA:   3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 28043 0.73 0.232103
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 22487 0.73 0.233934
Target:  5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3'
miRNA:   3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 15812 0.73 0.240125
Target:  5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3'
miRNA:   3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 41062 0.73 0.240125
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 7232 0.72 0.294658
Target:  5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3'
miRNA:   3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 4603 0.72 0.294658
Target:  5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3'
miRNA:   3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 9721 0.71 0.302115
Target:  5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3'
miRNA:   3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.