miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 228 0.79 0.102699
Target:  5'- -cGCACCUCGGCauUGGCGCGCuGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 489 0.67 0.522353
Target:  5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3'
miRNA:   3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5'
26450 3' -56.4 NC_005357.1 + 626 0.66 0.624519
Target:  5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3'
miRNA:   3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 1307 0.67 0.532979
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 2035 0.69 0.411184
Target:  5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3'
miRNA:   3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5'
26450 3' -56.4 NC_005357.1 + 2778 0.68 0.490996
Target:  5'- -gACACCUCGACguugCGCaGGUGCGCc--- -3'
miRNA:   3'- gaUGUGGAGCUG----GUG-CCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 3667 0.68 0.450612
Target:  5'- -aGCACCUCGuCCACGccuuCGUGCGAa- -3'
miRNA:   3'- gaUGUGGAGCuGGUGCc---GCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 4603 0.72 0.294658
Target:  5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3'
miRNA:   3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 4742 0.69 0.431115
Target:  5'- -cGCGauguUCUCGGCCACGGC-CGCGAu- -3'
miRNA:   3'- gaUGU----GGAGCUGGUGCCGcGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 5409 0.69 0.437883
Target:  5'- -aGCACCUucugCGuacgcuCCACGGCGCggauggcggcguggGCGAGGu -3'
miRNA:   3'- gaUGUGGA----GCu-----GGUGCCGCG--------------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 5607 0.74 0.204969
Target:  5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3'
miRNA:   3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 6381 0.68 0.480738
Target:  5'- uUACACCaggUCGGCCgccGCGGCGCcCucGGu -3'
miRNA:   3'- gAUGUGG---AGCUGG---UGCCGCGcGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 6584 0.68 0.460541
Target:  5'- --cCGCCUCGGCCAgGGgGCuGCGGu- -3'
miRNA:   3'- gauGUGGAGCUGGUgCCgCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 6706 0.79 0.097019
Target:  5'- -cACACCUUGuCCugGGCGCGCAu-- -3'
miRNA:   3'- gaUGUGGAGCuGGugCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 6872 0.69 0.412121
Target:  5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3'
miRNA:   3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 7080 0.7 0.393653
Target:  5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3'
miRNA:   3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 7232 0.72 0.294658
Target:  5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3'
miRNA:   3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 7353 0.68 0.480738
Target:  5'- -cGCgGCCUCGACCuCGGCGUcguucguccaGCGGcGGg -3'
miRNA:   3'- gaUG-UGGAGCUGGuGCCGCG----------CGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 7960 0.71 0.309717
Target:  5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3'
miRNA:   3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5'
26450 3' -56.4 NC_005357.1 + 8058 0.74 0.224309
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.