miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 31499 0.69 0.412121
Target:  5'- -cAUACCUUG-CCGcCGGCGUGCugcuGGGc -3'
miRNA:   3'- gaUGUGGAGCuGGU-GCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 27504 0.71 0.325355
Target:  5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3'
miRNA:   3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 8619 0.71 0.325355
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 10576 0.7 0.384622
Target:  5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 12534 0.7 0.384622
Target:  5'- gUGCugCUCGACCuCGGCGuCGguGa- -3'
miRNA:   3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5'
26450 3' -56.4 NC_005357.1 + 8116 0.7 0.384622
Target:  5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3'
miRNA:   3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 7080 0.7 0.393653
Target:  5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3'
miRNA:   3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 33774 0.7 0.393653
Target:  5'- gCUGCACacagCGAgUACGGCGCGgccuGGGg -3'
miRNA:   3'- -GAUGUGga--GCUgGUGCCGCGCgu--UCC- -5'
26450 3' -56.4 NC_005357.1 + 2035 0.69 0.411184
Target:  5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3'
miRNA:   3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5'
26450 3' -56.4 NC_005357.1 + 8727 0.71 0.325355
Target:  5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 7960 0.71 0.309717
Target:  5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3'
miRNA:   3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5'
26450 3' -56.4 NC_005357.1 + 9721 0.71 0.302115
Target:  5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3'
miRNA:   3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 14661 0.76 0.143851
Target:  5'- uUGCACCUUGGCCugGGUGCGgGu-- -3'
miRNA:   3'- gAUGUGGAGCUGGugCCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 24161 0.76 0.160634
Target:  5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3'
miRNA:   3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5'
26450 3' -56.4 NC_005357.1 + 13153 0.75 0.174359
Target:  5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3'
miRNA:   3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 36947 0.74 0.20171
Target:  5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3'
miRNA:   3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5'
26450 3' -56.4 NC_005357.1 + 5607 0.74 0.204969
Target:  5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3'
miRNA:   3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 36679 0.74 0.221955
Target:  5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3'
miRNA:   3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 8981 0.73 0.227878
Target:  5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3'
miRNA:   3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 15812 0.73 0.240125
Target:  5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3'
miRNA:   3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.