miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 28745 0.67 0.565288
Target:  5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3'
miRNA:   3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 22541 0.67 0.565288
Target:  5'- ---uGCCaCGGCCAagaaGGCGCGCGAc- -3'
miRNA:   3'- gaugUGGaGCUGGUg---CCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 37826 0.67 0.554454
Target:  5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3'
miRNA:   3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5'
26450 3' -56.4 NC_005357.1 + 25787 0.67 0.554454
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 16696 0.67 0.554454
Target:  5'- -aGgGCCgUGACCACGuaGCGguAGGu -3'
miRNA:   3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 27487 0.67 0.554454
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26450 3' -56.4 NC_005357.1 + 32931 0.67 0.543682
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 29422 0.67 0.543682
Target:  5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3'
miRNA:   3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 16846 0.67 0.543682
Target:  5'- cCUGgGCCgcaGACCGCGGCGUaCAAc- -3'
miRNA:   3'- -GAUgUGGag-CUGGUGCCGCGcGUUcc -5'
26450 3' -56.4 NC_005357.1 + 23555 0.67 0.541536
Target:  5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 22313 0.67 0.532979
Target:  5'- -gGCA-UUCGACgACGGUGUGCuGGGc -3'
miRNA:   3'- gaUGUgGAGCUGgUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 1307 0.67 0.532979
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 41810 0.67 0.532979
Target:  5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3'
miRNA:   3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 26263 0.67 0.529783
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 22431 0.67 0.529783
Target:  5'- -cACGCCUUGACgGCGGCGgacuCGUccaguucgggaaucGAGGu -3'
miRNA:   3'- gaUGUGGAGCUGgUGCCGC----GCG--------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 12877 0.67 0.526594
Target:  5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3'
miRNA:   3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 34616 0.67 0.522353
Target:  5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3'
miRNA:   3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5'
26450 3' -56.4 NC_005357.1 + 489 0.67 0.522353
Target:  5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3'
miRNA:   3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5'
26450 3' -56.4 NC_005357.1 + 34178 0.67 0.51181
Target:  5'- -aACACCUgGGCCGCuugaaGCGCAAGc -3'
miRNA:   3'- gaUGUGGAgCUGGUGccg--CGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 14147 0.67 0.507617
Target:  5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3'
miRNA:   3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.