miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 5' -54.9 NC_005357.1 + 38707 0.77 0.12858
Target:  5'- aUCCGCgagcaugagcggAUGCGCCGcauGggGCAGCGCg -3'
miRNA:   3'- aAGGUGa-----------UACGCGGCc--CuuCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 36251 0.66 0.640844
Target:  5'- --aCGCUGcggcaagaccggccUGCGCUGGGAagaugacGGCGGCGa -3'
miRNA:   3'- aagGUGAU--------------ACGCGGCCCU-------UCGUUGCg -5'
26450 5' -54.9 NC_005357.1 + 33051 0.66 0.634008
Target:  5'- -cCCGCgugcugucGUGCGCuucauCGGGucgcgcAGCGACGCg -3'
miRNA:   3'- aaGGUGa-------UACGCG-----GCCCu-----UCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 23515 0.66 0.611233
Target:  5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3'
miRNA:   3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 25616 0.67 0.588534
Target:  5'- -aCCACg--GCGgCGcGGucgccAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCGCgGC-CCu----UCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 8991 0.67 0.577239
Target:  5'- uUUCCuCgccGCGCgGGGGcgcuuccagcaGGCGGCGCa -3'
miRNA:   3'- -AAGGuGauaCGCGgCCCU-----------UCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 37006 0.67 0.554803
Target:  5'- -gCCGCcAUccGCGCCGuGGAGCGuACGCa -3'
miRNA:   3'- aaGGUGaUA--CGCGGCcCUUCGU-UGCG- -5'
26450 5' -54.9 NC_005357.1 + 28390 0.67 0.554803
Target:  5'- gUUCCAgUucGaCGCCGGcGgcGCGGCGCc -3'
miRNA:   3'- -AAGGUgAuaC-GCGGCC-CuuCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 28281 0.67 0.54368
Target:  5'- -aCCGC---GCGCUGGGAcaCGGCGCa -3'
miRNA:   3'- aaGGUGauaCGCGGCCCUucGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 12156 0.69 0.457943
Target:  5'- cUUCCGCguagGCGUCGGGGucAGUguccGAUGCg -3'
miRNA:   3'- -AAGGUGaua-CGCGGCCCU--UCG----UUGCG- -5'
26450 5' -54.9 NC_005357.1 + 31015 0.7 0.389226
Target:  5'- gUCCACgg-GCuuGCCGGccGAGGCAaucGCGCg -3'
miRNA:   3'- aAGGUGauaCG--CGGCC--CUUCGU---UGCG- -5'
26450 5' -54.9 NC_005357.1 + 31528 0.7 0.370869
Target:  5'- -cUCGCUGUGuUGCCGuGGAAaCAGCGCc -3'
miRNA:   3'- aaGGUGAUAC-GCGGC-CCUUcGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 6729 0.7 0.370869
Target:  5'- -gCCGCU--GCGCUGGGccGCcGCGCu -3'
miRNA:   3'- aaGGUGAuaCGCGGCCCuuCGuUGCG- -5'
26450 5' -54.9 NC_005357.1 + 17700 0.71 0.361915
Target:  5'- -gCCACUcgG-GCCGGGAaaugcccaucgcGGCAagcuGCGCg -3'
miRNA:   3'- aaGGUGAuaCgCGGCCCU------------UCGU----UGCG- -5'
26450 5' -54.9 NC_005357.1 + 32547 0.69 0.427676
Target:  5'- -gCCACgc-GCcugGCCGaGAAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCG---CGGCcCUUCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 10054 0.69 0.417852
Target:  5'- cUUCCuGCUggGCgGCCGGGGccucGGCGGCGa -3'
miRNA:   3'- -AAGG-UGAuaCG-CGGCCCU----UCGUUGCg -5'
26450 5' -54.9 NC_005357.1 + 14536 0.7 0.379973
Target:  5'- aUCCGCgacGUGCUGGGcGAGCA-CGCc -3'
miRNA:   3'- aAGGUGauaCGCGGCCC-UUCGUuGCG- -5'
26450 5' -54.9 NC_005357.1 + 285 0.73 0.273539
Target:  5'- gUCCAgUAgcUGCGCCGGaAGGC-GCGCu -3'
miRNA:   3'- aAGGUgAU--ACGCGGCCcUUCGuUGCG- -5'
26450 5' -54.9 NC_005357.1 + 17353 0.73 0.245979
Target:  5'- --gCGCgcUGCGCUGGGuGGCGAUGCu -3'
miRNA:   3'- aagGUGauACGCGGCCCuUCGUUGCG- -5'
26450 5' -54.9 NC_005357.1 + 35689 0.66 0.645399
Target:  5'- uUUCCGCUAUugaGCGCgGcGGcc-CAGCGCa -3'
miRNA:   3'- -AAGGUGAUA---CGCGgC-CCuucGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.