Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 14569 | 0.67 | 0.468536 |
Target: 5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3' miRNA: 3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 14922 | 0.68 | 0.461539 |
Target: 5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3' miRNA: 3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 37505 | 0.68 | 0.461539 |
Target: 5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3' miRNA: 3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 19196 | 0.68 | 0.461539 |
Target: 5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3' miRNA: 3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 6661 | 0.68 | 0.461539 |
Target: 5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3' miRNA: 3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34478 | 0.68 | 0.450657 |
Target: 5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3' miRNA: 3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4644 | 0.68 | 0.450657 |
Target: 5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3' miRNA: 3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12302 | 0.68 | 0.441859 |
Target: 5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3' miRNA: 3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 41707 | 0.68 | 0.441859 |
Target: 5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3' miRNA: 3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28117 | 0.68 | 0.440887 |
Target: 5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3' miRNA: 3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 2381 | 0.68 | 0.432198 |
Target: 5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3' miRNA: 3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 24163 | 0.68 | 0.432198 |
Target: 5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3' miRNA: 3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 40003 | 0.68 | 0.422662 |
Target: 5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3' miRNA: 3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 330 | 0.69 | 0.413254 |
Target: 5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3' miRNA: 3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4188 | 0.69 | 0.403975 |
Target: 5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3' miRNA: 3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 14102 | 0.69 | 0.403975 |
Target: 5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3' miRNA: 3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 11407 | 0.69 | 0.394829 |
Target: 5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3' miRNA: 3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 37071 | 0.69 | 0.394829 |
Target: 5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3' miRNA: 3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 26313 | 0.69 | 0.385819 |
Target: 5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3' miRNA: 3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35161 | 0.69 | 0.383142 |
Target: 5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3' miRNA: 3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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