Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 28883 | 0.75 | 0.157487 |
Target: 5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3' miRNA: 3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13308 | 0.75 | 0.169526 |
Target: 5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3' miRNA: 3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 41606 | 0.75 | 0.165876 |
Target: 5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3' miRNA: 3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 5140 | 0.76 | 0.133462 |
Target: 5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3' miRNA: 3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35582 | 0.76 | 0.137218 |
Target: 5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3' miRNA: 3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 8784 | 0.77 | 0.126234 |
Target: 5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3' miRNA: 3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 31457 | 0.77 | 0.121732 |
Target: 5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3' miRNA: 3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18876 | 0.77 | 0.126234 |
Target: 5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3' miRNA: 3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 24572 | 0.78 | 0.092583 |
Target: 5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3' miRNA: 3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 29566 | 0.78 | 0.092583 |
Target: 5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3' miRNA: 3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 6363 | 0.78 | 0.101958 |
Target: 5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3' miRNA: 3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35176 | 0.8 | 0.073651 |
Target: 5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3' miRNA: 3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 38044 | 1.12 | 0.000323 |
Target: 5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3' miRNA: 3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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