miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 42258 0.67 0.61215
Target:  5'- gCCGGCAuucugcGCGCGGCaGCUugGGCAcUCGAu -3'
miRNA:   3'- -GGCCGU------UGCGUUGcCGG--UCGU-AGUUc -5'
26451 5' -54.3 NC_005357.1 + 33711 0.67 0.61215
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 7452 0.67 0.61215
Target:  5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3'
miRNA:   3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 3700 0.67 0.61215
Target:  5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3'
miRNA:   3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 38549 0.67 0.61215
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 4830 0.67 0.608767
Target:  5'- gCCGGCGccgucgucgaauucACGgaaAGCGGCCAGCuucCAAu -3'
miRNA:   3'- -GGCCGU--------------UGCg--UUGCCGGUCGua-GUUc -5'
26451 5' -54.3 NC_005357.1 + 7724 0.67 0.600882
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 13176 0.67 0.600882
Target:  5'- gUCGGCcGCGCugggcgcccuUGGCCGGCGUUg-- -3'
miRNA:   3'- -GGCCGuUGCGuu--------GCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 11837 0.68 0.589642
Target:  5'- aCCGGCcGCGCcGCGGUUGGCcugggCGAa -3'
miRNA:   3'- -GGCCGuUGCGuUGCCGGUCGua---GUUc -5'
26451 5' -54.3 NC_005357.1 + 27469 0.68 0.589642
Target:  5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 24141 0.68 0.589642
Target:  5'- gCCGGCuGCGCGccUGGCcCAGCGccUCGAc -3'
miRNA:   3'- -GGCCGuUGCGUu-GCCG-GUCGU--AGUUc -5'
26451 5' -54.3 NC_005357.1 + 18975 0.68 0.589642
Target:  5'- gCGGaCGACGUAAC-GCCAGUcgcgcaggGUCAGGc -3'
miRNA:   3'- gGCC-GUUGCGUUGcCGGUCG--------UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 2573 0.68 0.582915
Target:  5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3'
miRNA:   3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 30237 0.68 0.578439
Target:  5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3'
miRNA:   3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5'
26451 5' -54.3 NC_005357.1 + 39692 0.68 0.578439
Target:  5'- cCCGaGCAGCGCcg-GGCCGcGC-UCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuugCCGGU-CGuAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 24581 0.68 0.578439
Target:  5'- -gGGCGACGaggccaCggUGGCgGGCAUCAAc -3'
miRNA:   3'- ggCCGUUGC------GuuGCCGgUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 17080 0.68 0.578439
Target:  5'- gCCGGCuAUGCGAacUGGCCGGCcUgGAc -3'
miRNA:   3'- -GGCCGuUGCGUU--GCCGGUCGuAgUUc -5'
26451 5' -54.3 NC_005357.1 + 9817 0.68 0.567284
Target:  5'- gCGGCGuCGCGGCccuugacgcgGGCCAGCuugGUCAc- -3'
miRNA:   3'- gGCCGUuGCGUUG----------CCGGUCG---UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 33083 0.68 0.567284
Target:  5'- gCaGCGACGCGGCGGCCuaCAUCc-- -3'
miRNA:   3'- gGcCGUUGCGUUGCCGGucGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 20016 0.68 0.567284
Target:  5'- cUCGGCAugGC-GC-GCCuGCAUCAc- -3'
miRNA:   3'- -GGCCGUugCGuUGcCGGuCGUAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.