miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26452 3' -65.2 NC_005357.1 + 30224 0.83 0.009389
Target:  5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3'
miRNA:   3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 30414 0.67 0.17416
Target:  5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3'
miRNA:   3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 30562 0.71 0.075054
Target:  5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3'
miRNA:   3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 31026 0.75 0.042793
Target:  5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 34024 0.69 0.119801
Target:  5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3'
miRNA:   3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 34135 0.67 0.16964
Target:  5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3'
miRNA:   3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5'
26452 3' -65.2 NC_005357.1 + 34317 0.66 0.20359
Target:  5'- cGCCGGCC--GC-GCGGUGCaGGGCCu- -3'
miRNA:   3'- -CGGCUGGgaCGcCGUCGCG-CCCGGuu -5'
26452 3' -65.2 NC_005357.1 + 36045 0.66 0.203066
Target:  5'- gGCCGGCcggCCUGCGccugauuGCcGaCGUGGGCCGGu -3'
miRNA:   3'- -CGGCUG---GGACGC-------CGuC-GCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 36056 0.66 0.20359
Target:  5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3'
miRNA:   3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 37645 0.68 0.140845
Target:  5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3'
miRNA:   3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5'
26452 3' -65.2 NC_005357.1 + 37798 1.06 0.000109
Target:  5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3'
miRNA:   3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 37834 0.66 0.192827
Target:  5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3'
miRNA:   3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5'
26452 3' -65.2 NC_005357.1 + 38399 0.66 0.20359
Target:  5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3'
miRNA:   3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5'
26452 3' -65.2 NC_005357.1 + 39489 0.67 0.178787
Target:  5'- -aCGugCCgcGCGacGCGGUGUGGGCCGg -3'
miRNA:   3'- cgGCugGGa-CGC--CGUCGCGCCCGGUu -5'
26452 3' -65.2 NC_005357.1 + 41127 0.76 0.034101
Target:  5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3'
miRNA:   3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5'
26452 3' -65.2 NC_005357.1 + 41251 0.69 0.113462
Target:  5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3'
miRNA:   3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5'
26452 3' -65.2 NC_005357.1 + 41428 0.67 0.17416
Target:  5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3'
miRNA:   3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.