Results 41 - 57 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 30562 | 0.71 | 0.075054 |
Target: 5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3' miRNA: 3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 28545 | 0.72 | 0.065098 |
Target: 5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3' miRNA: 3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 25598 | 0.67 | 0.156703 |
Target: 5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3' miRNA: 3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 18270 | 0.67 | 0.156703 |
Target: 5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3' miRNA: 3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 17635 | 0.66 | 0.20359 |
Target: 5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3' miRNA: 3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 24234 | 0.66 | 0.200463 |
Target: 5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3' miRNA: 3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 13312 | 0.66 | 0.193329 |
Target: 5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3' miRNA: 3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 11379 | 0.66 | 0.18837 |
Target: 5'- cCCGGCaCCU-CGGUGGCGaccugauGGGCCAGg -3' miRNA: 3'- cGGCUG-GGAcGCCGUCGCg------CCCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 41428 | 0.67 | 0.17416 |
Target: 5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3' miRNA: 3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 39489 | 0.67 | 0.178787 |
Target: 5'- -aCGugCCgcGCGacGCGGUGUGGGCCGg -3' miRNA: 3'- cgGCugGGa-CGC--CGUCGCGCCCGGUu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 8831 | 0.67 | 0.17416 |
Target: 5'- gGUCGGgCCaGCcGCAaCGCGGGCCAGc -3' miRNA: 3'- -CGGCUgGGaCGcCGUcGCGCCCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 6369 | 0.67 | 0.16964 |
Target: 5'- aCCGGCCCacGuCGGCaaucaGGCGCaGGCCGg -3' miRNA: 3'- cGGCUGGGa-C-GCCG-----UCGCGcCCGGUu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 23561 | 0.67 | 0.16964 |
Target: 5'- gGCCGACaucGcCGGCAgGUGCGGGCgGGg -3' miRNA: 3'- -CGGCUGggaC-GCCGU-CGCGCCCGgUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 34135 | 0.67 | 0.16964 |
Target: 5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3' miRNA: 3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 8627 | 0.67 | 0.16964 |
Target: 5'- cUCGGCCgCUGCGGUGGCGaGGucGCCGg -3' miRNA: 3'- cGGCUGG-GACGCCGUCGCgCC--CGGUu -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 432 | 0.67 | 0.165225 |
Target: 5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3' miRNA: 3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5' |
|||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 31026 | 0.75 | 0.042793 |
Target: 5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home