miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26452 3' -65.2 NC_005357.1 + 432 0.67 0.165225
Target:  5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3'
miRNA:   3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 529 0.71 0.079344
Target:  5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3'
miRNA:   3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5'
26452 3' -65.2 NC_005357.1 + 679 0.69 0.123093
Target:  5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3'
miRNA:   3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 1763 0.71 0.086222
Target:  5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3'
miRNA:   3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 1859 0.67 0.160488
Target:  5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3'
miRNA:   3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 2206 0.67 0.152188
Target:  5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3'
miRNA:   3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5'
26452 3' -65.2 NC_005357.1 + 2446 0.66 0.18837
Target:  5'- cGCCGAaaCUGCGGCccaGGCGCucGCCu- -3'
miRNA:   3'- -CGGCUggGACGCCG---UCGCGccCGGuu -5'
26452 3' -65.2 NC_005357.1 + 4018 0.7 0.096278
Target:  5'- cGCCGGCCaccaGCGucauGCcGCGCGGGUCGAg -3'
miRNA:   3'- -CGGCUGGga--CGC----CGuCGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 4040 0.7 0.104538
Target:  5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3'
miRNA:   3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 5101 0.67 0.152593
Target:  5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3'
miRNA:   3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5'
26452 3' -65.2 NC_005357.1 + 6369 0.67 0.16964
Target:  5'- aCCGGCCCacGuCGGCaaucaGGCGCaGGCCGg -3'
miRNA:   3'- cGGCUGGGa-C-GCCG-----UCGCGcCCGGUu -5'
26452 3' -65.2 NC_005357.1 + 7229 0.7 0.093665
Target:  5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3'
miRNA:   3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 8627 0.67 0.16964
Target:  5'- cUCGGCCgCUGCGGUGGCGaGGucGCCGg -3'
miRNA:   3'- cGGCUGG-GACGCCGUCGCgCC--CGGUu -5'
26452 3' -65.2 NC_005357.1 + 8831 0.67 0.17416
Target:  5'- gGUCGGgCCaGCcGCAaCGCGGGCCAGc -3'
miRNA:   3'- -CGGCUgGGaCGcCGUcGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 8852 0.66 0.203066
Target:  5'- cGCCGacguaGCCCaggacggUGCGGUAGCGUucGGCCu- -3'
miRNA:   3'- -CGGC-----UGGG-------ACGCCGUCGCGc-CCGGuu -5'
26452 3' -65.2 NC_005357.1 + 9192 0.69 0.123093
Target:  5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3'
miRNA:   3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5'
26452 3' -65.2 NC_005357.1 + 9580 0.67 0.156703
Target:  5'- cGCCGACCguCUGCGGCcaGGCGaa-GCCGu -3'
miRNA:   3'- -CGGCUGG--GACGCCG--UCGCgccCGGUu -5'
26452 3' -65.2 NC_005357.1 + 9811 0.66 0.18837
Target:  5'- -gCGACCgCggcgucGCGGCccuuGaCGCGGGCCAGc -3'
miRNA:   3'- cgGCUGG-Ga-----CGCCGu---C-GCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 10117 0.71 0.081577
Target:  5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3'
miRNA:   3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5'
26452 3' -65.2 NC_005357.1 + 10674 0.68 0.12993
Target:  5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3'
miRNA:   3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.