Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 6369 | 0.67 | 0.16964 |
Target: 5'- aCCGGCCCacGuCGGCaaucaGGCGCaGGCCGg -3' miRNA: 3'- cGGCUGGGa-C-GCCG-----UCGCGcCCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 23561 | 0.67 | 0.16964 |
Target: 5'- gGCCGACaucGcCGGCAgGUGCGGGCgGGg -3' miRNA: 3'- -CGGCUGggaC-GCCGU-CGCGCCCGgUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 34135 | 0.67 | 0.16964 |
Target: 5'- cGCUGGCUgcaCUGCcccGGCAGCGUGGcccuggaaGCCGAa -3' miRNA: 3'- -CGGCUGG---GACG---CCGUCGCGCC--------CGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 8627 | 0.67 | 0.16964 |
Target: 5'- cUCGGCCgCUGCGGUGGCGaGGucGCCGg -3' miRNA: 3'- cGGCUGG-GACGCCGUCGCgCC--CGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 432 | 0.67 | 0.165225 |
Target: 5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3' miRNA: 3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 1859 | 0.67 | 0.160488 |
Target: 5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3' miRNA: 3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 9580 | 0.67 | 0.156703 |
Target: 5'- cGCCGACCguCUGCGGCcaGGCGaa-GCCGu -3' miRNA: 3'- -CGGCUGG--GACGCCG--UCGCgccCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 25309 | 0.67 | 0.156703 |
Target: 5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3' miRNA: 3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 25598 | 0.67 | 0.156703 |
Target: 5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3' miRNA: 3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 18270 | 0.67 | 0.156703 |
Target: 5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3' miRNA: 3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 5101 | 0.67 | 0.152593 |
Target: 5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3' miRNA: 3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 2206 | 0.67 | 0.152188 |
Target: 5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3' miRNA: 3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 37645 | 0.68 | 0.140845 |
Target: 5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3' miRNA: 3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 28397 | 0.68 | 0.133478 |
Target: 5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3' miRNA: 3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 29247 | 0.68 | 0.133478 |
Target: 5'- cGCCGGCCaaggGCGccCAGCGC-GGCCGAc -3' miRNA: 3'- -CGGCUGGga--CGCc-GUCGCGcCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 10674 | 0.68 | 0.12993 |
Target: 5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3' miRNA: 3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 9192 | 0.69 | 0.123093 |
Target: 5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3' miRNA: 3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 679 | 0.69 | 0.123093 |
Target: 5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3' miRNA: 3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 34024 | 0.69 | 0.119801 |
Target: 5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3' miRNA: 3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 41251 | 0.69 | 0.113462 |
Target: 5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3' miRNA: 3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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