Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26452 | 5' | -55.8 | NC_005357.1 | + | 37833 | 1.11 | 0.000393 |
Target: 5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3' miRNA: 3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 30852 | 0.79 | 0.098335 |
Target: 5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3' miRNA: 3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 7052 | 0.75 | 0.183728 |
Target: 5'- aGGCgcaUGGCCUcGGGCGGCAgcgUCGUuugAACa -3' miRNA: 3'- -CCG---ACUGGA-CCCGCCGU---AGCGua-UUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 10081 | 0.74 | 0.210685 |
Target: 5'- cGGCgaccgcagcGACCUGGGCGGCgGUUGUcggGACg -3' miRNA: 3'- -CCGa--------CUGGACCCGCCG-UAGCGua-UUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 333 | 0.74 | 0.216469 |
Target: 5'- aGGCUGGC---GGUGGCGUCGCGcAGCa -3' miRNA: 3'- -CCGACUGgacCCGCCGUAGCGUaUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 35182 | 0.73 | 0.240979 |
Target: 5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3' miRNA: 3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 34367 | 0.72 | 0.267761 |
Target: 5'- aGGCagcGACCUGGGCGcGCGUCauggacggcgGCAagGACg -3' miRNA: 3'- -CCGa--CUGGACCCGC-CGUAG----------CGUa-UUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 36902 | 0.71 | 0.304553 |
Target: 5'- gGGCgGaACCUGGGCGGCcg-GCGUGccuACg -3' miRNA: 3'- -CCGaC-UGGACCCGCCGuagCGUAU---UG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 33746 | 0.71 | 0.320321 |
Target: 5'- cGGCgcacACCUGGGCGGCGcaGCAgccGCu -3' miRNA: 3'- -CCGac--UGGACCCGCCGUagCGUau-UG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 4093 | 0.7 | 0.371237 |
Target: 5'- aGGCcGGCCaggUGGGCGGCgcugaauucGUCGCGg--- -3' miRNA: 3'- -CCGaCUGG---ACCCGCCG---------UAGCGUauug -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 6703 | 0.7 | 0.380242 |
Target: 5'- aGGCacaccuUGuCCUGGGCGcGCAUCuGCuugAGCa -3' miRNA: 3'- -CCG------ACuGGACCCGC-CGUAG-CGua-UUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 8598 | 0.69 | 0.389392 |
Target: 5'- cGGC-GACCgugGGGaUGGCGUagGCGUGGCc -3' miRNA: 3'- -CCGaCUGGa--CCC-GCCGUAg-CGUAUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 13456 | 0.69 | 0.398685 |
Target: 5'- uGGC-GGCCUcgGGcGCGGUGUCggGCAUGACc -3' miRNA: 3'- -CCGaCUGGA--CC-CGCCGUAG--CGUAUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 26269 | 0.69 | 0.408119 |
Target: 5'- cGCcGGCCUGGuCGGCucgCGCAUcGCg -3' miRNA: 3'- cCGaCUGGACCcGCCGua-GCGUAuUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 11600 | 0.69 | 0.413846 |
Target: 5'- cGGCUGGCCgccGGGCaGCAgugccagcggaaGCAUGAg -3' miRNA: 3'- -CCGACUGGa--CCCGcCGUag----------CGUAUUg -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 11850 | 0.69 | 0.417692 |
Target: 5'- cGGUUGGCCUGGGCGaaccccgcGCcaauAUCGCccAUGAg -3' miRNA: 3'- -CCGACUGGACCCGC--------CG----UAGCG--UAUUg -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 9198 | 0.69 | 0.4274 |
Target: 5'- cGUUGGCCUGcucGGCGGCGcggCGCAc--- -3' miRNA: 3'- cCGACUGGAC---CCGCCGUa--GCGUauug -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 29175 | 0.68 | 0.43625 |
Target: 5'- aGGCUuccucGACUUGGGCcucggugaugaccGGCAggucggacgcgCGCAUGGCg -3' miRNA: 3'- -CCGA-----CUGGACCCG-------------CCGUa----------GCGUAUUG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 4531 | 0.68 | 0.447209 |
Target: 5'- uGGC-GugCUGGGCGGUcgUGCcgccGCg -3' miRNA: 3'- -CCGaCugGACCCGCCGuaGCGuau-UG- -5' |
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26452 | 5' | -55.8 | NC_005357.1 | + | 37725 | 0.68 | 0.447209 |
Target: 5'- gGGCU-ACgaGGGCGGCGUCGg----- -3' miRNA: 3'- -CCGAcUGgaCCCGCCGUAGCguauug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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