miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 37304 1.14 0.001999
Target:  5'- gACAACGCAGACAACAUCAAUGCGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37364 0.83 0.228122
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 8570 0.79 0.360878
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13020 0.77 0.438617
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 17956 0.77 0.475987
Target:  5'- -uGGCGCAGGCAagcagcaggucgucgGCGUCAAUGUcGCCg -3'
miRNA:   3'- ugUUGCGUCUGU---------------UGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 5441 0.77 0.471635
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37810 0.76 0.538815
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 4240 0.75 0.573636
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29967 0.75 0.573636
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 27161 0.75 0.561961
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 37410 0.75 0.578323
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 33869 0.74 0.620789
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 36837 0.74 0.608955
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 18465 0.74 0.649215
Target:  5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37253 0.74 0.620789
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 26882 0.73 0.703248
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30926 0.73 0.6916
Target:  5'- cCAGCGCAGGCGcgcccuuuGCGgugUCGcagGCGACCa -3'
miRNA:   3'- uGUUGCGUCUGU--------UGU---AGUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37013 0.73 0.679885
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 31266 0.73 0.6916
Target:  5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3'
miRNA:   3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 18713 0.72 0.747776
Target:  5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3'
miRNA:   3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.