miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 14745 0.66 0.966786
Target:  5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3'
miRNA:   3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 8118 0.66 0.963001
Target:  5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3'
miRNA:   3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5'
26454 3' -47.7 NC_005357.1 + 27596 0.66 0.960592
Target:  5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3'
miRNA:   3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23193 0.66 0.958926
Target:  5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3'
miRNA:   3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 20607 0.66 0.958503
Target:  5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3'
miRNA:   3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33238 0.66 0.963001
Target:  5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3'
miRNA:   3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 29284 0.66 0.966786
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 1460 0.66 0.966786
Target:  5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 41437 0.66 0.973518
Target:  5'- -uGGCGCGGGCAGCGggcugaCGGUGaagGGCUg -3'
miRNA:   3'- ugUUGCGUCUGUUGUa-----GUUACg--CUGG- -5'
26454 3' -47.7 NC_005357.1 + 11355 0.66 0.96995
Target:  5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3'
miRNA:   3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4882 0.66 0.970288
Target:  5'- cCAGCGCGG-CGACG-----GCGGCCu -3'
miRNA:   3'- uGUUGCGUCuGUUGUaguuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38322 0.67 0.954099
Target:  5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3'
miRNA:   3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5'
26454 3' -47.7 NC_005357.1 + 33750 0.67 0.944888
Target:  5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28874 0.67 0.949876
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 17176 0.67 0.949876
Target:  5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3'
miRNA:   3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 34379 0.67 0.944372
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37571 0.67 0.944372
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9563 0.67 0.954553
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38980 0.67 0.954553
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 34663 0.67 0.949876
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.