miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 30009 0.72 0.726288
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26266 0.72 0.726288
Target:  5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3'
miRNA:   3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 14568 0.72 0.737653
Target:  5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3'
miRNA:   3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 18713 0.72 0.747776
Target:  5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3'
miRNA:   3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 18969 0.72 0.748894
Target:  5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5'
26454 3' -47.7 NC_005357.1 + 38083 0.72 0.759998
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 21805 0.72 0.759998
Target:  5'- -gAGCGCAGGcCGACAcCGAccUGCGACg -3'
miRNA:   3'- ugUUGCGUCU-GUUGUaGUU--ACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 40315 0.71 0.77095
Target:  5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3'
miRNA:   3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27413 0.71 0.781736
Target:  5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3'
miRNA:   3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5'
26454 3' -47.7 NC_005357.1 + 23651 0.71 0.781736
Target:  5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3'
miRNA:   3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13613 0.71 0.792343
Target:  5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3'
miRNA:   3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 34615 0.71 0.792343
Target:  5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 31357 0.71 0.801724
Target:  5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 20323 0.71 0.802756
Target:  5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3'
miRNA:   3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37154 0.71 0.802756
Target:  5'- gACAACGCc-GCgAACAUCAAcacgGUGGCCg -3'
miRNA:   3'- -UGUUGCGucUG-UUGUAGUUa---CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21454 0.71 0.812962
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28139 0.7 0.822948
Target:  5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3'
miRNA:   3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 17005 0.7 0.822948
Target:  5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3'
miRNA:   3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 3744 0.7 0.822948
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 22295 0.7 0.831737
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.