miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 5' -50.4 NC_005357.1 + 34371 0.7 0.669212
Target:  5'- -cGGUGAACugaugGUCGA-GCAGCGGUUGa -3'
miRNA:   3'- guUCGCUUG-----UAGUUaCGUCGCCAGCc -5'
26454 5' -50.4 NC_005357.1 + 14752 0.68 0.80098
Target:  5'- --cGCGcAGCAUUGGcgcGCAGCGuGUCGGu -3'
miRNA:   3'- guuCGC-UUGUAGUUa--CGUCGC-CAGCC- -5'
26454 5' -50.4 NC_005357.1 + 26031 0.68 0.82081
Target:  5'- -cGGCGAugGCAUCAAaGCccgcGCGG-CGGg -3'
miRNA:   3'- guUCGCU--UGUAGUUaCGu---CGCCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 40155 0.67 0.830401
Target:  5'- -cAGCGAACccaucGUCAacGUGguGCGcGUCGa -3'
miRNA:   3'- guUCGCUUG-----UAGU--UACguCGC-CAGCc -5'
26454 5' -50.4 NC_005357.1 + 41960 0.67 0.839761
Target:  5'- -uGGCGAuuGUCGAaGCGGUGGUgcgCGGc -3'
miRNA:   3'- guUCGCUugUAGUUaCGUCGCCA---GCC- -5'
26454 5' -50.4 NC_005357.1 + 9516 0.67 0.848879
Target:  5'- -uGGCGAACAguggCAucAUGCuGCGGcccuguUCGGc -3'
miRNA:   3'- guUCGCUUGUa---GU--UACGuCGCC------AGCC- -5'
26454 5' -50.4 NC_005357.1 + 4523 0.67 0.848879
Target:  5'- --cGUGAACGUgGcGUGCugGGCGGUCGu -3'
miRNA:   3'- guuCGCUUGUAgU-UACG--UCGCCAGCc -5'
26454 5' -50.4 NC_005357.1 + 17758 0.66 0.874685
Target:  5'- cCAGGUGuGCAguUCGA-GCAGCGaGUCGc -3'
miRNA:   3'- -GUUCGCuUGU--AGUUaCGUCGC-CAGCc -5'
26454 5' -50.4 NC_005357.1 + 23416 0.66 0.897994
Target:  5'- uGAGCGcGCcgGUCAGUGCGacGCcGGcCGGg -3'
miRNA:   3'- gUUCGCuUG--UAGUUACGU--CG-CCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 7327 0.66 0.897994
Target:  5'- --uGCGAACG-CA--GCAGCcGGUUGGc -3'
miRNA:   3'- guuCGCUUGUaGUuaCGUCG-CCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 39657 0.78 0.284145
Target:  5'- --uGCGcAACGUCGAggugucgGCAGUGGUCGGc -3'
miRNA:   3'- guuCGC-UUGUAGUUa------CGUCGCCAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.