miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 4106 0.67 0.846878
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5'
26455 3' -50.7 NC_005357.1 + 23377 0.67 0.846878
Target:  5'- uGGCGuGC-CCGCuGAAaAUCAGCACGGu -3'
miRNA:   3'- gCUGU-UGcGGCG-CUUgUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37474 0.67 0.846878
Target:  5'- -aGCAGCGCgauaCGCGGcuGCAUCGugGCGc -3'
miRNA:   3'- gcUGUUGCG----GCGCU--UGUAGUugUGCc -5'
26455 3' -50.7 NC_005357.1 + 3491 0.67 0.845987
Target:  5'- aCGACGGC-CCGCuguaccaGAGCG-CAGCGCGa -3'
miRNA:   3'- -GCUGUUGcGGCG-------CUUGUaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 996 0.67 0.845987
Target:  5'- uGGCggUGCCGUGGuucaccgcaGCGUCGAacaccuggaaggcCACGGc -3'
miRNA:   3'- gCUGuuGCGGCGCU---------UGUAGUU-------------GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 41328 0.68 0.837866
Target:  5'- gCGAC-AUGCCGCG-----CGACACGGc -3'
miRNA:   3'- -GCUGuUGCGGCGCuuguaGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 36639 0.68 0.837866
Target:  5'- uGGCGcUGCCGCGAugGCGg-GACACGa -3'
miRNA:   3'- gCUGUuGCGGCGCU--UGUagUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 36342 0.68 0.828623
Target:  5'- -cGCAAgGCCGCGcucGACGacuUCGAgGCGGu -3'
miRNA:   3'- gcUGUUgCGGCGC---UUGU---AGUUgUGCC- -5'
26455 3' -50.7 NC_005357.1 + 34367 0.68 0.828623
Target:  5'- aGGCAGCGaCCuggGCGcGCGUCAugGaCGGc -3'
miRNA:   3'- gCUGUUGC-GG---CGCuUGUAGUugU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 37445 0.68 0.828623
Target:  5'- gCGGUAGCGgCGaaCGAaggaaACGUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCgGC--GCU-----UGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 25543 0.68 0.819159
Target:  5'- cCGGCAGCGCCcccguagcCGAugAUGUCGGCGuCGGa -3'
miRNA:   3'- -GCUGUUGCGGc-------GCU--UGUAGUUGU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 37668 0.68 0.819159
Target:  5'- gGGCgAACGCCGaGAACAUC---GCGGc -3'
miRNA:   3'- gCUG-UUGCGGCgCUUGUAGuugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 35983 0.68 0.819159
Target:  5'- aCGGCGACGCCuucGCGGGCGgugguguCGCGa -3'
miRNA:   3'- -GCUGUUGCGG---CGCUUGUaguu---GUGCc -5'
26455 3' -50.7 NC_005357.1 + 34883 0.68 0.809485
Target:  5'- aCGACccgGCCGCGAGC--CAGCguGCGGa -3'
miRNA:   3'- -GCUGuugCGGCGCUUGuaGUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 27136 0.68 0.808506
Target:  5'- ---uGACGCCGCGcGCAUCAcucgaagucccccACGCGc -3'
miRNA:   3'- gcugUUGCGGCGCuUGUAGU-------------UGUGCc -5'
26455 3' -50.7 NC_005357.1 + 16419 0.68 0.806543
Target:  5'- gGACAcgGCCGCGGgguaaucgccggcgGCGUUgAACACGGc -3'
miRNA:   3'- gCUGUugCGGCGCU--------------UGUAG-UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 24034 0.68 0.799611
Target:  5'- cCGACGugGCCGCcaccggcgcCAUCGGCAaGGc -3'
miRNA:   3'- -GCUGUugCGGCGcuu------GUAGUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 32090 0.68 0.799611
Target:  5'- aGGCAcACGCCGC-AGCGaCGGCuACGGc -3'
miRNA:   3'- gCUGU-UGCGGCGcUUGUaGUUG-UGCC- -5'
26455 3' -50.7 NC_005357.1 + 24220 0.69 0.78955
Target:  5'- cCGACAGC-CCGCGcaucGCGUaacgaggugaCAGCAUGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCu---UGUA----------GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 28035 0.69 0.78955
Target:  5'- uCGGCGuCGCCGaaGAACAcgUCGGCgACGGu -3'
miRNA:   3'- -GCUGUuGCGGCg-CUUGU--AGUUG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.