miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 5' -53 NC_005357.1 + 26875 0.66 0.805617
Target:  5'- -aCGGCGCCAuugaccuggACGUggaggcCGGCACCGUG-Ca -3'
miRNA:   3'- cgGUUGCGGU---------UGCA------GUUGUGGCACcG- -5'
26455 5' -53 NC_005357.1 + 33347 0.66 0.805617
Target:  5'- gGCCucGCgGCCAgugaggggaugcACccCGAUACCGUGGCc -3'
miRNA:   3'- -CGGu-UG-CGGU------------UGcaGUUGUGGCACCG- -5'
26455 5' -53 NC_005357.1 + 22770 0.66 0.805617
Target:  5'- gGUgAGgGCCGAUugGUCAACGCCcugcgGGCc -3'
miRNA:   3'- -CGgUUgCGGUUG--CAGUUGUGGca---CCG- -5'
26455 5' -53 NC_005357.1 + 5283 0.66 0.799714
Target:  5'- uCCAGCGUCGauugcugcaugucugGCagGUCGAgGCCGUaGGCc -3'
miRNA:   3'- cGGUUGCGGU---------------UG--CAGUUgUGGCA-CCG- -5'
26455 5' -53 NC_005357.1 + 14937 0.66 0.795741
Target:  5'- gGCCGAggcCGCCGGCaUCcuCGCguggugCGUGGCg -3'
miRNA:   3'- -CGGUU---GCGGUUGcAGuuGUG------GCACCG- -5'
26455 5' -53 NC_005357.1 + 16167 0.66 0.795741
Target:  5'- aGCCGACcagGCCGGCGgguGC-CCGUgccuucGGCg -3'
miRNA:   3'- -CGGUUG---CGGUUGCaguUGuGGCA------CCG- -5'
26455 5' -53 NC_005357.1 + 10001 0.66 0.795741
Target:  5'- aGUCGcUGCCGuCGUCuugGCAgaCGUGGCg -3'
miRNA:   3'- -CGGUuGCGGUuGCAGu--UGUg-GCACCG- -5'
26455 5' -53 NC_005357.1 + 26502 0.66 0.789727
Target:  5'- cGCCGACucgcaaGCCGGCaUCAuuCACCGccacgguuuucagcaUGGCg -3'
miRNA:   3'- -CGGUUG------CGGUUGcAGUu-GUGGC---------------ACCG- -5'
26455 5' -53 NC_005357.1 + 29219 0.66 0.785684
Target:  5'- -aCGugGUCAagaacaugcagGCGUaCAACGCCGgccaagGGCg -3'
miRNA:   3'- cgGUugCGGU-----------UGCA-GUUGUGGCa-----CCG- -5'
26455 5' -53 NC_005357.1 + 40927 0.66 0.785684
Target:  5'- gGgCAACGUCAucaaguACGUgAGC-CgGUGGCg -3'
miRNA:   3'- -CgGUUGCGGU------UGCAgUUGuGgCACCG- -5'
26455 5' -53 NC_005357.1 + 9575 0.66 0.785684
Target:  5'- cUCGGCGCCGAcCGUCuGCggccaggcgaaGCCGUugcGGCu -3'
miRNA:   3'- cGGUUGCGGUU-GCAGuUG-----------UGGCA---CCG- -5'
26455 5' -53 NC_005357.1 + 37319 0.66 0.785684
Target:  5'- -aCGGCGCCAGCc---GCACCGgacgcugGGCc -3'
miRNA:   3'- cgGUUGCGGUUGcaguUGUGGCa------CCG- -5'
26455 5' -53 NC_005357.1 + 40194 0.66 0.785684
Target:  5'- gGCCAAgGcCCGGCGUUuAUACCGcgacaUGGa -3'
miRNA:   3'- -CGGUUgC-GGUUGCAGuUGUGGC-----ACCg -5'
26455 5' -53 NC_005357.1 + 7741 0.66 0.785684
Target:  5'- uGCCAuuccuGCGCaguCAGCGauugCAGCACCG-GcGCg -3'
miRNA:   3'- -CGGU-----UGCG---GUUGCa---GUUGUGGCaC-CG- -5'
26455 5' -53 NC_005357.1 + 3885 0.66 0.785684
Target:  5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3'
miRNA:   3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5'
26455 5' -53 NC_005357.1 + 32319 0.66 0.785684
Target:  5'- cGCCAucaAgGCCGGCGUCccGACaACCGccGCc -3'
miRNA:   3'- -CGGU---UgCGGUUGCAG--UUG-UGGCacCG- -5'
26455 5' -53 NC_005357.1 + 24516 0.66 0.784669
Target:  5'- cGCCcACGCCGaucACGUCcagguggAugACCGcgUGGUc -3'
miRNA:   3'- -CGGuUGCGGU---UGCAG-------UugUGGC--ACCG- -5'
26455 5' -53 NC_005357.1 + 15896 0.66 0.776488
Target:  5'- gGgCGGCGCCAugcugaaaACCGUGGCg -3'
miRNA:   3'- -CgGUUGCGGUugcaguugUGGCACCG- -5'
26455 5' -53 NC_005357.1 + 9437 0.66 0.775459
Target:  5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3'
miRNA:   3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5'
26455 5' -53 NC_005357.1 + 19878 0.66 0.775459
Target:  5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3'
miRNA:   3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.