Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 5' | -53.1 | NC_005357.1 | + | 35050 | 0.72 | 0.417692 |
Target: 5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3' miRNA: 3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19325 | 0.72 | 0.43724 |
Target: 5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3' miRNA: 3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 5351 | 0.72 | 0.447209 |
Target: 5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3' miRNA: 3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 33077 | 0.72 | 0.457303 |
Target: 5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3' miRNA: 3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8949 | 0.72 | 0.457303 |
Target: 5'- -uUCGCCAGCGguggccguGCcgCGAuagcCAGCGUGGc -3' miRNA: 3'- acAGCGGUUGC--------UGuaGCU----GUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 27146 | 0.71 | 0.47785 |
Target: 5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3' miRNA: 3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 36013 | 0.71 | 0.498841 |
Target: 5'- aGgCGCCAACGACAUgGGCcGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 35180 | 0.7 | 0.520234 |
Target: 5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3' miRNA: 3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 22072 | 0.7 | 0.529978 |
Target: 5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3' miRNA: 3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 29960 | 0.7 | 0.541976 |
Target: 5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3' miRNA: 3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 7511 | 0.7 | 0.546362 |
Target: 5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3' miRNA: 3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 12028 | 0.7 | 0.552961 |
Target: 5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3' miRNA: 3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 40276 | 0.7 | 0.552961 |
Target: 5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3' miRNA: 3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 14201 | 0.7 | 0.552961 |
Target: 5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3' miRNA: 3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 37524 | 0.7 | 0.557374 |
Target: 5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3' miRNA: 3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 28039 | 0.7 | 0.564012 |
Target: 5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3' miRNA: 3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 40718 | 0.7 | 0.564012 |
Target: 5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3' miRNA: 3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 34761 | 0.7 | 0.568449 |
Target: 5'- cGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3' miRNA: 3'- aCaGCGGU---------------UGCUGUagCU--GUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 23252 | 0.7 | 0.575121 |
Target: 5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUagCUGUCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 28558 | 0.69 | 0.596354 |
Target: 5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3' miRNA: 3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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