miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 3' -54.6 NC_005357.1 + 36816 1.09 0.000846
Target:  5'- aACAUCGACGCCGUGGCUACCAACGAGg -3'
miRNA:   3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 37136 0.78 0.14141
Target:  5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3'
miRNA:   3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 34437 0.77 0.176898
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26457 3' -54.6 NC_005357.1 + 37540 0.76 0.202371
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 14840 0.76 0.202923
Target:  5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 36846 0.74 0.271956
Target:  5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3'
miRNA:   3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 20143 0.73 0.320185
Target:  5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3'
miRNA:   3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 9856 0.72 0.358643
Target:  5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3'
miRNA:   3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 23248 0.72 0.341533
Target:  5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3'
miRNA:   3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 1696 0.71 0.367419
Target:  5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3'
miRNA:   3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 12007 0.7 0.423095
Target:  5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3'
miRNA:   3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 16821 0.7 0.442747
Target:  5'- gACcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3'
miRNA:   3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5'
26457 3' -54.6 NC_005357.1 + 25987 0.69 0.494011
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 25095 0.69 0.51527
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 22008 0.69 0.51527
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 16886 0.68 0.580986
Target:  5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3'
miRNA:   3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 2844 0.68 0.536889
Target:  5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3'
miRNA:   3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 26573 0.68 0.558816
Target:  5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3'
miRNA:   3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 41710 0.68 0.579872
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaucaUcaaggaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG-----------A-------------UGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 21328 0.68 0.543438
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.