miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 3' -54.6 NC_005357.1 + 24802 0.66 0.703967
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 25095 0.69 0.51527
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 25658 0.67 0.614549
Target:  5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3'
miRNA:   3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 25987 0.69 0.494011
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 26573 0.68 0.558816
Target:  5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3'
miRNA:   3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 27452 0.67 0.592141
Target:  5'- ---cCGACGCCauucUGGCgACCGGCGAc -3'
miRNA:   3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 27581 0.67 0.625782
Target:  5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3'
miRNA:   3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 29925 0.67 0.592141
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26457 3' -54.6 NC_005357.1 + 32656 0.66 0.703967
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26457 3' -54.6 NC_005357.1 + 33654 0.66 0.670665
Target:  5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3'
miRNA:   3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5'
26457 3' -54.6 NC_005357.1 + 34437 0.77 0.176898
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26457 3' -54.6 NC_005357.1 + 35982 0.67 0.63702
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 36033 0.66 0.681819
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 36816 1.09 0.000846
Target:  5'- aACAUCGACGCCGUGGCUACCAACGAGg -3'
miRNA:   3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 36846 0.74 0.271956
Target:  5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3'
miRNA:   3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 36877 0.67 0.63702
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26457 3' -54.6 NC_005357.1 + 37097 0.67 0.592141
Target:  5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3'
miRNA:   3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 37136 0.78 0.14141
Target:  5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3'
miRNA:   3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 37540 0.76 0.202371
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 39254 0.67 0.592141
Target:  5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3'
miRNA:   3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.