miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 18395 0.8 0.037997
Target:  5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3'
miRNA:   3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18524 0.68 0.291214
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18675 0.75 0.087149
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 19199 0.66 0.378889
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5'
26457 5' -60.5 NC_005357.1 + 21101 0.66 0.387688
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 21287 0.71 0.173642
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 21584 0.73 0.121855
Target:  5'- cGGCcacuuCGGUGGCGGUCAucuGCGgauUGGUGCc -3'
miRNA:   3'- -CUGu----GCCACCGCCGGU---CGCa--ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 21724 0.69 0.226028
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 22231 0.71 0.183172
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 23713 0.67 0.298485
Target:  5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3'
miRNA:   3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 24906 0.69 0.244174
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 26619 0.67 0.305896
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26457 5' -60.5 NC_005357.1 + 27434 0.66 0.353308
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27633 0.66 0.373675
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27836 0.67 0.305896
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28662 0.68 0.284082
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28758 0.66 0.361698
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28885 0.66 0.370225
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 29394 0.7 0.203624
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 30673 0.66 0.378889
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.