miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 354 0.77 0.247221
Target:  5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3'
miRNA:   3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 679 0.66 0.843126
Target:  5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3'
miRNA:   3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 1182 0.67 0.774494
Target:  5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3'
miRNA:   3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5'
26458 3' -51.8 NC_005357.1 + 1527 0.69 0.686787
Target:  5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3'
miRNA:   3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 4822 0.67 0.753267
Target:  5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3'
miRNA:   3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5'
26458 3' -51.8 NC_005357.1 + 7711 0.69 0.664038
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 8525 0.73 0.439855
Target:  5'- -gUCGCCGGCGAACUUgcccagguaucgcaGGCCGcGCuCGa -3'
miRNA:   3'- ugAGCGGCUGUUUGAA--------------UCGGCuUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 8702 0.68 0.70931
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 8924 0.67 0.774494
Target:  5'- uCUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 9563 0.71 0.550135
Target:  5'- uGCUCGCCGgugGCGAGCauccGGUCGAACaCGu -3'
miRNA:   3'- -UGAGCGGC---UGUUUGaa--UCGGCUUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 9885 0.67 0.774494
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26458 3' -51.8 NC_005357.1 + 11105 0.66 0.833955
Target:  5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3'
miRNA:   3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 11185 0.66 0.843126
Target:  5'- -gUCGcCCGGCucguAGCUgGGCCGcgcGCCGg -3'
miRNA:   3'- ugAGC-GGCUGu---UUGAaUCGGCu--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 11776 0.69 0.686787
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5'
26458 3' -51.8 NC_005357.1 + 14917 0.75 0.323077
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 16793 0.67 0.795083
Target:  5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3'
miRNA:   3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 17084 0.68 0.742446
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 17113 0.66 0.852056
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 18000 0.71 0.538977
Target:  5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3'
miRNA:   3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 18035 0.7 0.583995
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.