Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 8133 | 0.67 | 0.745658 |
|
Target: 5'- gCGUUg--GUUGUGGGCGugCgGgugUCGg -3' miRNA: 3'- -GCAGuuaCAGCACCCGCugGaCa--AGC- -5' |
|||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 30601 | 0.7 | 0.578439 |
|
Target: 5'- aCGUCGGUGgcaucGGCGAUCUGUUCu -3' miRNA: 3'- -GCAGUUACagcacCCGCUGGACAAGc -5' |
|||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 5346 | 0.71 | 0.491182 |
|
Target: 5'- uGUCGAUGUCGUuGGCGACagccaacaUGcUCGa -3' miRNA: 3'- gCAGUUACAGCAcCCGCUGg-------ACaAGC- -5' |
|||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 10408 | 0.75 | 0.314103 |
|
Target: 5'- -uUCAAUGUCGUGGGCGuCCaGcgugUCGa -3' miRNA: 3'- gcAGUUACAGCACCCGCuGGaCa---AGC- -5' |
|||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 36877 | 0.76 | 0.262221 |
|
Target: 5'- cCGUCGAUaccGUgGcGGGCGACCUGggCGg -3' miRNA: 3'- -GCAGUUA---CAgCaCCCGCUGGACaaGC- -5' |
|||||||
| 26459 | 3' | -52.7 | NC_005357.1 | + | 36135 | 1.11 | 0.001209 |
|
Target: 5'- cCGUCAAUGUCGUGGGCGACCUGUUCGg -3' miRNA: 3'- -GCAGUUACAGCACCCGCUGGACAAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home