miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 41337 0.66 0.647348
Target:  5'- cGCGCGacacggccaAGGcaaUCuACCGCGCgCGUUACu -3'
miRNA:   3'- uCGCGCg--------UCU---AGuUGGCGUG-GCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 37476 0.68 0.556779
Target:  5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3'
miRNA:   3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 36169 1.09 0.000871
Target:  5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3'
miRNA:   3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 35345 0.68 0.556779
Target:  5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5'
26459 5' -54.2 NC_005357.1 + 34883 0.68 0.567971
Target:  5'- uGGCGcCGCGGAUCgAGCaCGcCGCCGa--- -3'
miRNA:   3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 34792 0.68 0.534596
Target:  5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3'
miRNA:   3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 34593 0.66 0.680227
Target:  5'- cGUGCGCcuGGUCAucgugcaGCCGCGCCu---- -3'
miRNA:   3'- uCGCGCGu-CUAGU-------UGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 33214 0.71 0.409969
Target:  5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3'
miRNA:   3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 32431 0.68 0.545651
Target:  5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3'
miRNA:   3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 31612 0.68 0.534596
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 31231 0.69 0.48066
Target:  5'- -aUGCGCGGcAUUGACCGCACCa---- -3'
miRNA:   3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 31071 0.69 0.523621
Target:  5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3'
miRNA:   3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 30045 0.74 0.267831
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 29575 0.75 0.210185
Target:  5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3'
miRNA:   3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 29362 0.66 0.703795
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 29257 0.69 0.523621
Target:  5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3'
miRNA:   3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5'
26459 5' -54.2 NC_005357.1 + 28862 0.69 0.523621
Target:  5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3'
miRNA:   3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5'
26459 5' -54.2 NC_005357.1 + 28764 0.72 0.340981
Target:  5'- cGGUGCGCGGucauAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3'
miRNA:   3'- -UCGCGCGUC----UAGU---------------UGGCGUGGCa---AUG- -5'
26459 5' -54.2 NC_005357.1 + 28573 0.69 0.48066
Target:  5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3'
miRNA:   3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5'
26459 5' -54.2 NC_005357.1 + 28236 0.73 0.2973
Target:  5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3'
miRNA:   3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.