Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 104996 | 0.69 | 0.737886 |
Target: 5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3' miRNA: 3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 105029 | 0.69 | 0.737886 |
Target: 5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3' miRNA: 3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 105062 | 0.69 | 0.737886 |
Target: 5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3' miRNA: 3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 105095 | 0.69 | 0.737886 |
Target: 5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3' miRNA: 3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 21689 | 0.69 | 0.737886 |
Target: 5'- uUCUGAguccAACCGCACCCACcaacagGGUCugGg -3' miRNA: 3'- gAGGCU----UUGGCGUGGGUG------UCGGugUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 33397 | 0.69 | 0.737886 |
Target: 5'- -cCCGGcccaggccGCCGCugCCGCGGCCAg-- -3' miRNA: 3'- gaGGCUu-------UGGCGugGGUGUCGGUgua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 12596 | 0.69 | 0.707975 |
Target: 5'- cCUCCGAcGGCCGcCGCCgcggcaGCGGCCGCc- -3' miRNA: 3'- -GAGGCU-UUGGC-GUGGg-----UGUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 90110 | 0.69 | 0.697861 |
Target: 5'- uUCCGccGCCGCGCgCCGCucggaGGCUACAc -3' miRNA: 3'- gAGGCuuUGGCGUG-GGUG-----UCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 29542 | 0.69 | 0.694816 |
Target: 5'- -gCCGGguAACCGUAuuuuagcgccccccCCCAUAGCCGCAc -3' miRNA: 3'- gaGGCU--UUGGCGU--------------GGGUGUCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 99869 | 0.7 | 0.677475 |
Target: 5'- uUCUGGGcaggucccGCCGcCACCCAC-GCCGCAg -3' miRNA: 3'- gAGGCUU--------UGGC-GUGGGUGuCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 118276 | 0.7 | 0.667221 |
Target: 5'- -gCCaGAGCCGCACCCAaacGCCGCc- -3' miRNA: 3'- gaGGcUUUGGCGUGGGUgu-CGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 56622 | 0.7 | 0.667221 |
Target: 5'- gCUCCacgcuGGCCGUagcaACCCACAGCUACu- -3' miRNA: 3'- -GAGGcu---UUGGCG----UGGGUGUCGGUGua -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 10123 | 0.7 | 0.646635 |
Target: 5'- gCUCCGGAGCgGCgccgggccGCCCGCggaggccuGGCCGCGc -3' miRNA: 3'- -GAGGCUUUGgCG--------UGGGUG--------UCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 33437 | 0.7 | 0.646635 |
Target: 5'- -cCCGAGGCCccgGCGCCCuCGGuCCGCGUc -3' miRNA: 3'- gaGGCUUUGG---CGUGGGuGUC-GGUGUA- -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 56689 | 0.71 | 0.614658 |
Target: 5'- -cCCGAAucuggccACCGCAUCCAaAGCCAUAg -3' miRNA: 3'- gaGGCUU-------UGGCGUGGGUgUCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 33822 | 0.71 | 0.595107 |
Target: 5'- gCUCCGAcgAGCUGCGCCuCGCGGUgCGCGc -3' miRNA: 3'- -GAGGCU--UUGGCGUGG-GUGUCG-GUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 33504 | 0.71 | 0.584854 |
Target: 5'- -cCCGAcGCaagGCugCCGCGGCCGCGg -3' miRNA: 3'- gaGGCUuUGg--CGugGGUGUCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 49218 | 0.72 | 0.55433 |
Target: 5'- gCUCCGGGACCGagagagcgagauCACCCACcuCCGCGa -3' miRNA: 3'- -GAGGCUUUGGC------------GUGGGUGucGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 52839 | 0.72 | 0.544255 |
Target: 5'- -gCCaGggGCCaGCACCCaggcACAGCCGCGg -3' miRNA: 3'- gaGG-CuuUGG-CGUGGG----UGUCGGUGUa -5' |
|||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 24621 | 0.73 | 0.456925 |
Target: 5'- -cCCGGggcGGCCGCugCCGCGGCgGCGg -3' miRNA: 3'- gaGGCU---UUGGCGugGGUGUCGgUGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home