Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26460 | 3' | -59.9 | NC_005357.1 | + | 20615 | 0.66 | 0.406815 |
Target: 5'- aGGCgGCGUCGcaggucGGUGUCGGCcuGCGcUCGu -3' miRNA: 3'- -CCGaCGCAGUc-----CCGCAGUCG--CGC-AGC- -5' |
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26460 | 3' | -59.9 | NC_005357.1 | + | 24598 | 0.66 | 0.397772 |
Target: 5'- cGGC-GUGUCcuugccGGGGUagGUCAGCGgcaCGUCGa -3' miRNA: 3'- -CCGaCGCAG------UCCCG--CAGUCGC---GCAGC- -5' |
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26460 | 3' | -59.9 | NC_005357.1 | + | 30291 | 0.66 | 0.4347 |
Target: 5'- cGGaaGCG-CAGcGCGU-GGCGCGUCGc -3' miRNA: 3'- -CCgaCGCaGUCcCGCAgUCGCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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