Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 3' | -55.3 | NC_005357.1 | + | 38933 | 0.66 | 0.623124 |
Target: 5'- cGCUGCGcUCugguacaGCGGGCCGUCGuucuCGuucGCg -3' miRNA: 3'- aCGACGCaAG-------CGUCUGGUAGCu---GC---CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 39764 | 0.68 | 0.503552 |
Target: 5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3' miRNA: 3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 40538 | 0.71 | 0.332923 |
Target: 5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3' miRNA: 3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 41284 | 0.66 | 0.657819 |
Target: 5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3' miRNA: 3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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