miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 35112 1.12 0.000416
Target:  5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3'
miRNA:   3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 33962 0.81 0.075247
Target:  5'- gGCUGCGgcaUCGCAGGCCAccUCGACGcCg -3'
miRNA:   3'- aCGACGCa--AGCGUCUGGU--AGCUGCcG- -5'
26461 3' -55.3 NC_005357.1 + 33230 0.76 0.172325
Target:  5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 20762 0.74 0.226197
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 14825 0.74 0.238554
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 20583 0.72 0.293681
Target:  5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3'
miRNA:   3'- acGACGCaa---GCGUCUGGUAGCUGccg -5'
26461 3' -55.3 NC_005357.1 + 28553 0.72 0.316779
Target:  5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3'
miRNA:   3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 40538 0.71 0.332923
Target:  5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3'
miRNA:   3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1924 0.71 0.341219
Target:  5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3'
miRNA:   3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 26656 0.71 0.341219
Target:  5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3'
miRNA:   3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 12282 0.71 0.349663
Target:  5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3'
miRNA:   3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 22413 0.71 0.358255
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1145 0.71 0.366994
Target:  5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3'
miRNA:   3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 4811 0.71 0.375879
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 26169 0.7 0.403389
Target:  5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3'
miRNA:   3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 14372 0.7 0.409042
Target:  5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3'
miRNA:   3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5'
26461 3' -55.3 NC_005357.1 + 6194 0.7 0.412838
Target:  5'- cGCaGCGUUUGCAGG----UGACGGCg -3'
miRNA:   3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 27009 0.7 0.422423
Target:  5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3'
miRNA:   3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5'
26461 3' -55.3 NC_005357.1 + 30580 0.69 0.43214
Target:  5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3'
miRNA:   3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 38319 0.69 0.43214
Target:  5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3'
miRNA:   3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.