miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 1145 0.71 0.366994
Target:  5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3'
miRNA:   3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1680 0.68 0.540052
Target:  5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3'
miRNA:   3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5'
26461 3' -55.3 NC_005357.1 + 1924 0.71 0.341219
Target:  5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3'
miRNA:   3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 2518 0.67 0.54659
Target:  5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3'
miRNA:   3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 4522 0.67 0.557541
Target:  5'- cGCUugaGCGcaUCGCAGACCA-CGAaGGUc -3'
miRNA:   3'- aCGA---CGCa-AGCGUCUGGUaGCUgCCG- -5'
26461 3' -55.3 NC_005357.1 + 4811 0.71 0.375879
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 5276 0.67 0.590731
Target:  5'- gUGUUGaUGUUCGCGGcGuuGUCGgccACGGCg -3'
miRNA:   3'- -ACGAC-GCAAGCGUC-UggUAGC---UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 5841 0.66 0.646637
Target:  5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3'
miRNA:   3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5'
26461 3' -55.3 NC_005357.1 + 6194 0.7 0.412838
Target:  5'- cGCaGCGUUUGCAGG----UGACGGCg -3'
miRNA:   3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 7295 0.69 0.462052
Target:  5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3'
miRNA:   3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8187 0.66 0.639921
Target:  5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3'
miRNA:   3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8428 0.68 0.524904
Target:  5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3'
miRNA:   3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 8559 0.66 0.654466
Target:  5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3'
miRNA:   3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8633 0.69 0.482587
Target:  5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3'
miRNA:   3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8878 0.66 0.639921
Target:  5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3'
miRNA:   3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 9816 0.68 0.48779
Target:  5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 10058 0.68 0.503552
Target:  5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3'
miRNA:   3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 11172 0.68 0.524904
Target:  5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3'
miRNA:   3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 12282 0.71 0.349663
Target:  5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3'
miRNA:   3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 13947 0.66 0.657819
Target:  5'- aUGCcgaGCGgaUGCucGACCAcuacgCGACGGCc -3'
miRNA:   3'- -ACGa--CGCaaGCGu-CUGGUa----GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.