miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 35941 0.67 0.557541
Target:  5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3'
miRNA:   3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 11172 0.68 0.524904
Target:  5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3'
miRNA:   3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 29057 0.68 0.535709
Target:  5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3'
miRNA:   3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 15590 0.68 0.535709
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26461 3' -55.3 NC_005357.1 + 14350 0.68 0.535709
Target:  5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3'
miRNA:   3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5'
26461 3' -55.3 NC_005357.1 + 1680 0.68 0.540052
Target:  5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3'
miRNA:   3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5'
26461 3' -55.3 NC_005357.1 + 2518 0.67 0.54659
Target:  5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3'
miRNA:   3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 35562 0.67 0.54659
Target:  5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3'
miRNA:   3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 23710 0.67 0.557541
Target:  5'- gGUaGCGcccaggUCGCGGGCCAgugccUCGGUGGCg -3'
miRNA:   3'- aCGaCGCa-----AGCGUCUGGU-----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 18280 0.68 0.524904
Target:  5'- uUGCcgGCcgUCaGCGGGCCGguggCGACGGUg -3'
miRNA:   3'- -ACGa-CGcaAG-CGUCUGGUa---GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8633 0.69 0.482587
Target:  5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3'
miRNA:   3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 7295 0.69 0.462052
Target:  5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3'
miRNA:   3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 20762 0.74 0.226197
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 14825 0.74 0.238554
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 28553 0.72 0.316779
Target:  5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3'
miRNA:   3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 40538 0.71 0.332923
Target:  5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3'
miRNA:   3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 22413 0.71 0.358255
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 4811 0.71 0.375879
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 26169 0.7 0.403389
Target:  5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3'
miRNA:   3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 24144 0.69 0.441986
Target:  5'- gGCUGCG--CGCcuGGCCcagcgccUCGACGGCu -3'
miRNA:   3'- aCGACGCaaGCGu-CUGGu------AGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.