miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 5276 0.67 0.590731
Target:  5'- gUGUUGaUGUUCGCGGcGuuGUCGgccACGGCg -3'
miRNA:   3'- -ACGAC-GCAAGCGUC-UggUAGC---UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 22439 0.67 0.568554
Target:  5'- aGUUGgcgaGUUcuaCGCGGA-CAUCGGCGGCc -3'
miRNA:   3'- aCGACg---CAA---GCGUCUgGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 4522 0.67 0.557541
Target:  5'- cGCUugaGCGcaUCGCAGACCA-CGAaGGUc -3'
miRNA:   3'- aCGA---CGCa-AGCGUCUGGUaGCUgCCG- -5'
26461 3' -55.3 NC_005357.1 + 35941 0.67 0.557541
Target:  5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3'
miRNA:   3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 23710 0.67 0.557541
Target:  5'- gGUaGCGcccaggUCGCGGGCCAgugccUCGGUGGCg -3'
miRNA:   3'- aCGaCGCa-----AGCGUCUGGU-----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 37805 0.67 0.54659
Target:  5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3'
miRNA:   3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5'
26461 3' -55.3 NC_005357.1 + 2518 0.67 0.54659
Target:  5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3'
miRNA:   3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5'
26461 3' -55.3 NC_005357.1 + 35562 0.67 0.54659
Target:  5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3'
miRNA:   3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1680 0.68 0.540052
Target:  5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3'
miRNA:   3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5'
26461 3' -55.3 NC_005357.1 + 14350 0.68 0.535709
Target:  5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3'
miRNA:   3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5'
26461 3' -55.3 NC_005357.1 + 15590 0.68 0.535709
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26461 3' -55.3 NC_005357.1 + 29057 0.68 0.535709
Target:  5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3'
miRNA:   3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 8428 0.68 0.524904
Target:  5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3'
miRNA:   3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 18280 0.68 0.524904
Target:  5'- uUGCcgGCcgUCaGCGGGCCGguggCGACGGUg -3'
miRNA:   3'- -ACGa-CGcaAG-CGUCUGGUa---GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 11172 0.68 0.524904
Target:  5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3'
miRNA:   3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 10058 0.68 0.503552
Target:  5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3'
miRNA:   3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 39764 0.68 0.503552
Target:  5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3'
miRNA:   3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 21274 0.68 0.491971
Target:  5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3'
miRNA:   3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 9816 0.68 0.48779
Target:  5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8633 0.69 0.482587
Target:  5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3'
miRNA:   3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.