miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 3' -51.2 NC_005357.1 + 39246 0.66 0.86635
Target:  5'- ---cGCGUGCGUguGcaaGAACACUg -3'
miRNA:   3'- cuauCGCACGCAguCuagCUUGUGGa -5'
26462 3' -51.2 NC_005357.1 + 7901 0.66 0.830401
Target:  5'- ---cGCGUGCG-UAGAUCGccAGCugCUc -3'
miRNA:   3'- cuauCGCACGCaGUCUAGC--UUGugGA- -5'
26462 3' -51.2 NC_005357.1 + 10073 0.66 0.830401
Target:  5'- --aGGCGU-CGUCGGggCGAGCcguGCCa -3'
miRNA:   3'- cuaUCGCAcGCAGUCuaGCUUG---UGGa -5'
26462 3' -51.2 NC_005357.1 + 2473 0.66 0.82081
Target:  5'- --aGGCGUGCugcacaaggcgGUCuuuGAauUCGAGCGCCg -3'
miRNA:   3'- cuaUCGCACG-----------CAGu--CU--AGCUUGUGGa -5'
26462 3' -51.2 NC_005357.1 + 11009 0.66 0.82081
Target:  5'- --gAGCGUauugGCGUC-GAU-GAACACCUg -3'
miRNA:   3'- cuaUCGCA----CGCAGuCUAgCUUGUGGA- -5'
26462 3' -51.2 NC_005357.1 + 18935 0.66 0.82081
Target:  5'- -cUGGCGUuuuuCGUCAGuUCGGACACg- -3'
miRNA:   3'- cuAUCGCAc---GCAGUCuAGCUUGUGga -5'
26462 3' -51.2 NC_005357.1 + 21295 0.67 0.810999
Target:  5'- --cAGCGgucgGCGUCGaacuuGUCGAGCACUUc -3'
miRNA:   3'- cuaUCGCa---CGCAGUc----UAGCUUGUGGA- -5'
26462 3' -51.2 NC_005357.1 + 4028 0.67 0.810999
Target:  5'- --cAGCGUcaugccGCG-CGGGUCGAGCGCa- -3'
miRNA:   3'- cuaUCGCA------CGCaGUCUAGCUUGUGga -5'
26462 3' -51.2 NC_005357.1 + 9570 0.67 0.780368
Target:  5'- cGGUGGCGaGCaUCcGGUCGAACACg- -3'
miRNA:   3'- -CUAUCGCaCGcAGuCUAGCUUGUGga -5'
26462 3' -51.2 NC_005357.1 + 28151 0.68 0.759075
Target:  5'- --cAGCuUGCcggugGUCAGAUCGAccACGCCg -3'
miRNA:   3'- cuaUCGcACG-----CAGUCUAGCU--UGUGGa -5'
26462 3' -51.2 NC_005357.1 + 4413 0.68 0.759075
Target:  5'- --gAGCGUGCGgcagucgUAGGUCGuacccggccgcAACACCg -3'
miRNA:   3'- cuaUCGCACGCa------GUCUAGC-----------UUGUGGa -5'
26462 3' -51.2 NC_005357.1 + 37648 0.68 0.759075
Target:  5'- --cGGCGUGCugggcgcaGUguGggCGAACGCCg -3'
miRNA:   3'- cuaUCGCACG--------CAguCuaGCUUGUGGa -5'
26462 3' -51.2 NC_005357.1 + 34880 0.68 0.726089
Target:  5'- cGGUGGCGc-CG-CGGAUCGAGCACg- -3'
miRNA:   3'- -CUAUCGCacGCaGUCUAGCUUGUGga -5'
26462 3' -51.2 NC_005357.1 + 16473 0.68 0.726089
Target:  5'- --gGGCGUGaCGgaCAGGUCGGGCGCg- -3'
miRNA:   3'- cuaUCGCAC-GCa-GUCUAGCUUGUGga -5'
26462 3' -51.2 NC_005357.1 + 25043 0.69 0.656514
Target:  5'- --aAGCgGUGCGUCGGcgCGAugcaggcAUACCUg -3'
miRNA:   3'- cuaUCG-CACGCAGUCuaGCU-------UGUGGA- -5'
26462 3' -51.2 NC_005357.1 + 29568 0.7 0.646101
Target:  5'- --cGGgGUaucGCGUCAGGUCGGccGCGCCc -3'
miRNA:   3'- cuaUCgCA---CGCAGUCUAGCU--UGUGGa -5'
26462 3' -51.2 NC_005357.1 + 34900 0.72 0.520304
Target:  5'- --cAGCGUGCGgaAGAacacUCGGACGCCg -3'
miRNA:   3'- cuaUCGCACGCagUCU----AGCUUGUGGa -5'
26462 3' -51.2 NC_005357.1 + 28318 0.72 0.498303
Target:  5'- --cGGCGcgcucgGCGUCGGAcUCGAugGCCUu -3'
miRNA:   3'- cuaUCGCa-----CGCAGUCU-AGCUugUGGA- -5'
26462 3' -51.2 NC_005357.1 + 34158 1.09 0.001791
Target:  5'- cGAUAGCGUGCGUCAGAUCGAACACCUg -3'
miRNA:   3'- -CUAUCGCACGCAGUCUAGCUUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.