Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26462 | 3' | -51.2 | NC_005357.1 | + | 39246 | 0.66 | 0.86635 |
Target: 5'- ---cGCGUGCGUguGcaaGAACACUg -3' miRNA: 3'- cuauCGCACGCAguCuagCUUGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 7901 | 0.66 | 0.830401 |
Target: 5'- ---cGCGUGCG-UAGAUCGccAGCugCUc -3' miRNA: 3'- cuauCGCACGCaGUCUAGC--UUGugGA- -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 10073 | 0.66 | 0.830401 |
Target: 5'- --aGGCGU-CGUCGGggCGAGCcguGCCa -3' miRNA: 3'- cuaUCGCAcGCAGUCuaGCUUG---UGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 2473 | 0.66 | 0.82081 |
Target: 5'- --aGGCGUGCugcacaaggcgGUCuuuGAauUCGAGCGCCg -3' miRNA: 3'- cuaUCGCACG-----------CAGu--CU--AGCUUGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 11009 | 0.66 | 0.82081 |
Target: 5'- --gAGCGUauugGCGUC-GAU-GAACACCUg -3' miRNA: 3'- cuaUCGCA----CGCAGuCUAgCUUGUGGA- -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 18935 | 0.66 | 0.82081 |
Target: 5'- -cUGGCGUuuuuCGUCAGuUCGGACACg- -3' miRNA: 3'- cuAUCGCAc---GCAGUCuAGCUUGUGga -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 21295 | 0.67 | 0.810999 |
Target: 5'- --cAGCGgucgGCGUCGaacuuGUCGAGCACUUc -3' miRNA: 3'- cuaUCGCa---CGCAGUc----UAGCUUGUGGA- -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 4028 | 0.67 | 0.810999 |
Target: 5'- --cAGCGUcaugccGCG-CGGGUCGAGCGCa- -3' miRNA: 3'- cuaUCGCA------CGCaGUCUAGCUUGUGga -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 9570 | 0.67 | 0.780368 |
Target: 5'- cGGUGGCGaGCaUCcGGUCGAACACg- -3' miRNA: 3'- -CUAUCGCaCGcAGuCUAGCUUGUGga -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 28151 | 0.68 | 0.759075 |
Target: 5'- --cAGCuUGCcggugGUCAGAUCGAccACGCCg -3' miRNA: 3'- cuaUCGcACG-----CAGUCUAGCU--UGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 4413 | 0.68 | 0.759075 |
Target: 5'- --gAGCGUGCGgcagucgUAGGUCGuacccggccgcAACACCg -3' miRNA: 3'- cuaUCGCACGCa------GUCUAGC-----------UUGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 37648 | 0.68 | 0.759075 |
Target: 5'- --cGGCGUGCugggcgcaGUguGggCGAACGCCg -3' miRNA: 3'- cuaUCGCACG--------CAguCuaGCUUGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 34880 | 0.68 | 0.726089 |
Target: 5'- cGGUGGCGc-CG-CGGAUCGAGCACg- -3' miRNA: 3'- -CUAUCGCacGCaGUCUAGCUUGUGga -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 16473 | 0.68 | 0.726089 |
Target: 5'- --gGGCGUGaCGgaCAGGUCGGGCGCg- -3' miRNA: 3'- cuaUCGCAC-GCa-GUCUAGCUUGUGga -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 25043 | 0.69 | 0.656514 |
Target: 5'- --aAGCgGUGCGUCGGcgCGAugcaggcAUACCUg -3' miRNA: 3'- cuaUCG-CACGCAGUCuaGCU-------UGUGGA- -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 29568 | 0.7 | 0.646101 |
Target: 5'- --cGGgGUaucGCGUCAGGUCGGccGCGCCc -3' miRNA: 3'- cuaUCgCA---CGCAGUCUAGCU--UGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 34900 | 0.72 | 0.520304 |
Target: 5'- --cAGCGUGCGgaAGAacacUCGGACGCCg -3' miRNA: 3'- cuaUCGCACGCagUCU----AGCUUGUGGa -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 28318 | 0.72 | 0.498303 |
Target: 5'- --cGGCGcgcucgGCGUCGGAcUCGAugGCCUu -3' miRNA: 3'- cuaUCGCa-----CGCAGUCU-AGCUugUGGA- -5' |
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26462 | 3' | -51.2 | NC_005357.1 | + | 34158 | 1.09 | 0.001791 |
Target: 5'- cGAUAGCGUGCGUCAGAUCGAACACCUg -3' miRNA: 3'- -CUAUCGCACGCAGUCUAGCUUGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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