miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 27416 0.67 0.397007
Target:  5'- cGucGCGCGccuGGCgcaccGCgcccGGCGGCCGCa -3'
miRNA:   3'- aCuuCGCGU---UCGa----CGa---CUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 27494 0.69 0.304068
Target:  5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3'
miRNA:   3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 27572 0.67 0.435045
Target:  5'- -aAGGCGCccAGCgUGCggcGCuGGCCGCCa -3'
miRNA:   3'- acUUCGCGu-UCG-ACGac-UG-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 27824 0.66 0.454838
Target:  5'- ---cGCGCGcGCUGCccGCGGUggCGCCg -3'
miRNA:   3'- acuuCGCGUuCGACGacUGCCG--GCGG- -5'
26462 5' -57.7 NC_005357.1 + 27825 0.73 0.184434
Target:  5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3'
miRNA:   3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 28527 0.69 0.333354
Target:  5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3'
miRNA:   3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 28891 0.71 0.247603
Target:  5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACUGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 29289 0.68 0.378807
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 29355 0.73 0.174601
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 30292 0.69 0.335817
Target:  5'- gGAAGCGC-AGC-GCgUGGCGcGUCGCg -3'
miRNA:   3'- aCUUCGCGuUCGaCG-ACUGC-CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 32346 0.67 0.425337
Target:  5'- cGccGCcCAGGUcGCUG-CGGUCGCCg -3'
miRNA:   3'- aCuuCGcGUUCGaCGACuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 32523 0.72 0.209481
Target:  5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3'
miRNA:   3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 32680 0.67 0.41576
Target:  5'- gUGAAGCcCGAGCaguucGCcGACGuGCuCGCCg -3'
miRNA:   3'- -ACUUCGcGUUCGa----CGaCUGC-CG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 33825 0.66 0.48541
Target:  5'- aGAAGCGCAaccAGCUuauccaGCaccaGGCCGCa -3'
miRNA:   3'- aCUUCGCGU---UCGA------CGacugCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 34192 1.12 0.000204
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34379 0.68 0.344123
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 34518 0.73 0.169861
Target:  5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3'
miRNA:   3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34713 0.69 0.301023
Target:  5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3'
miRNA:   3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34997 0.67 0.396084
Target:  5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3'
miRNA:   3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5'
26462 5' -57.7 NC_005357.1 + 35804 0.7 0.289079
Target:  5'- -cAAGCGCGcGaaGCUGGCGGCggacuaCGCCa -3'
miRNA:   3'- acUUCGCGUuCgaCGACUGCCG------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.