miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 21822 0.66 0.464915
Target:  5'- uUGcAGCgGCGGGUUGCUcuuguagucGAUGGCCugcGCCu -3'
miRNA:   3'- -ACuUCG-CGUUCGACGA---------CUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 19571 0.66 0.495818
Target:  5'- aGAAGCagcccaauucGCAGcGCgcGCUGuCGGCUGUCg -3'
miRNA:   3'- aCUUCG----------CGUU-CGa-CGACuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 22851 0.66 0.454838
Target:  5'- cGAcAGCGCGcGCUGC-GAauugGGCUGCUu -3'
miRNA:   3'- aCU-UCGCGUuCGACGaCUg---CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 27824 0.66 0.454838
Target:  5'- ---cGCGCGcGCUGCccGCGGUggCGCCg -3'
miRNA:   3'- acuuCGCGUuCGACGacUGCCG--GCGG- -5'
26462 5' -57.7 NC_005357.1 + 26529 0.66 0.475108
Target:  5'- aGcAGCgGCAAGCUGCUG--GGCCucaccuacguGCCc -3'
miRNA:   3'- aCuUCG-CGUUCGACGACugCCGG----------CGG- -5'
26462 5' -57.7 NC_005357.1 + 6175 0.66 0.468979
Target:  5'- --cAGCGCAGGCcggucuUGCcgcagcguuugcaggUGACGGCgCGCg -3'
miRNA:   3'- acuUCGCGUUCG------ACG---------------ACUGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 41387 0.66 0.454838
Target:  5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3'
miRNA:   3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 17120 0.66 0.506326
Target:  5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3'
miRNA:   3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 39491 0.66 0.48541
Target:  5'- gUGccGCGCGAcGC-GgUGugGGCCGgCa -3'
miRNA:   3'- -ACuuCGCGUU-CGaCgACugCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 7829 0.66 0.48541
Target:  5'- cGAGGCGC-GGCUGCacgaUGACcaGGCgcaCGCg -3'
miRNA:   3'- aCUUCGCGuUCGACG----ACUG--CCG---GCGg -5'
26462 5' -57.7 NC_005357.1 + 5133 0.66 0.48541
Target:  5'- uUGAAcUGCAAcguGCcGCgcaGGCGGCCGUCg -3'
miRNA:   3'- -ACUUcGCGUU---CGaCGa--CUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 36598 0.66 0.495818
Target:  5'- cGAc-CGCAcGgUGCUG-CGGCaCGCCa -3'
miRNA:   3'- aCUucGCGUuCgACGACuGCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 21746 0.66 0.48541
Target:  5'- -uGGGCGC-GGCcGCguccacauagGACaGGCCGCCc -3'
miRNA:   3'- acUUCGCGuUCGaCGa---------CUG-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 21107 0.66 0.484376
Target:  5'- -uGAGCGCGuuuuGCUugcugguaucgacGCUGcccagcuUGGCCGCCg -3'
miRNA:   3'- acUUCGCGUu---CGA-------------CGACu------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 14047 0.66 0.48541
Target:  5'- aUGGAGCGCGaaAGCccgGCgcugGGCGucGuuGCCu -3'
miRNA:   3'- -ACUUCGCGU--UCGa--CGa---CUGC--CggCGG- -5'
26462 5' -57.7 NC_005357.1 + 23536 0.66 0.495818
Target:  5'- gGcGGCGCAcGCgGUcGAUGGCCucgGCCg -3'
miRNA:   3'- aCuUCGCGUuCGaCGaCUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 36094 0.66 0.475108
Target:  5'- -cGGGCGCuuuGGCUGg-GGCGGaacgCGCCg -3'
miRNA:   3'- acUUCGCGu--UCGACgaCUGCCg---GCGG- -5'
26462 5' -57.7 NC_005357.1 + 37917 0.66 0.48541
Target:  5'- cGAuGCGcCAAGC-GcCUGugGcGCCGCg -3'
miRNA:   3'- aCUuCGC-GUUCGaC-GACugC-CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 13325 0.66 0.495818
Target:  5'- gGcGGCGUAGGCUuucGGCaGGUCGCCg -3'
miRNA:   3'- aCuUCGCGUUCGAcgaCUG-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 33825 0.66 0.48541
Target:  5'- aGAAGCGCAaccAGCUuauccaGCaccaGGCCGCa -3'
miRNA:   3'- aCUUCGCGU---UCGA------CGacugCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.