miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 34192 1.12 0.000204
Target:  5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3'
miRNA:   3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 37274 0.8 0.050826
Target:  5'- -aGGGCGUGAGCaGC-GACGGCCGCCu -3'
miRNA:   3'- acUUCGCGUUCGaCGaCUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 3557 0.78 0.077517
Target:  5'- cGAauAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3'
miRNA:   3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 16800 0.76 0.108329
Target:  5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3'
miRNA:   3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2383 0.74 0.139802
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34518 0.73 0.169861
Target:  5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3'
miRNA:   3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 13750 0.73 0.169861
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 29355 0.73 0.174601
Target:  5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3'
miRNA:   3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 23576 0.73 0.179457
Target:  5'- -cAGGUGCGGGCgggggGCgacGAUGGCCGUCa -3'
miRNA:   3'- acUUCGCGUUCGa----CGa--CUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 27825 0.73 0.184434
Target:  5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3'
miRNA:   3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 32523 0.72 0.209481
Target:  5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3'
miRNA:   3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 21174 0.72 0.211175
Target:  5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3'
miRNA:   3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5'
26462 5' -57.7 NC_005357.1 + 23729 0.72 0.211175
Target:  5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3'
miRNA:   3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5'
26462 5' -57.7 NC_005357.1 + 15686 0.72 0.211175
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 14920 0.71 0.228777
Target:  5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3'
miRNA:   3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 18065 0.71 0.234914
Target:  5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3'
miRNA:   3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 22965 0.71 0.247603
Target:  5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3'
miRNA:   3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 28891 0.71 0.247603
Target:  5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACUGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 14719 0.71 0.247603
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 25485 0.71 0.254157
Target:  5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3'
miRNA:   3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.