miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 1313 0.67 0.448849
Target:  5'- cGAucuuGCGUcugauGGCuuuuucugucagcccUGUuaUGACGGCCGCCa -3'
miRNA:   3'- aCUu---CGCGu----UCG---------------ACG--ACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2007 0.68 0.352576
Target:  5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3'
miRNA:   3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 2383 0.74 0.139802
Target:  5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3'
miRNA:   3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 2737 0.69 0.304068
Target:  5'- -uGAGCGCGGcccggcGCUGCUcgGGCGuGCCGaCCa -3'
miRNA:   3'- acUUCGCGUU------CGACGA--CUGC-CGGC-GG- -5'
26462 5' -57.7 NC_005357.1 + 3557 0.78 0.077517
Target:  5'- cGAauAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3'
miRNA:   3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 3611 0.66 0.506326
Target:  5'- uUGAccGCGCAuuuuGCUucGCUGGCGGUgGUa -3'
miRNA:   3'- -ACUu-CGCGUu---CGA--CGACUGCCGgCGg -5'
26462 5' -57.7 NC_005357.1 + 4271 0.7 0.267693
Target:  5'- --cAGCGCcGGCaUGgUGAUGGCCGUg -3'
miRNA:   3'- acuUCGCGuUCG-ACgACUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 4807 0.68 0.36992
Target:  5'- cUGgcGCuGCGGGaUUGCUGGCcggcgacaGGUCGCCg -3'
miRNA:   3'- -ACuuCG-CGUUC-GACGACUG--------CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 5133 0.66 0.48541
Target:  5'- uUGAAcUGCAAcguGCcGCgcaGGCGGCCGUCg -3'
miRNA:   3'- -ACUUcGCGUU---CGaCGa--CUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 5335 0.7 0.274676
Target:  5'- cGuGGCGCAGcauggcaucgcGCUGCg--UGGCCGCCu -3'
miRNA:   3'- aCuUCGCGUU-----------CGACGacuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 6175 0.66 0.468979
Target:  5'- --cAGCGCAGGCcggucuUGCcgcagcguuugcaggUGACGGCgCGCg -3'
miRNA:   3'- acuUCGCGUUCG------ACG---------------ACUGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 6369 0.68 0.387837
Target:  5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3'
miRNA:   3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 6839 0.68 0.344123
Target:  5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3'
miRNA:   3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 7414 0.67 0.41576
Target:  5'- uUGAAGC-CGGGCaccgGAUGGCCgGCCa -3'
miRNA:   3'- -ACUUCGcGUUCGacgaCUGCCGG-CGG- -5'
26462 5' -57.7 NC_005357.1 + 7829 0.66 0.48541
Target:  5'- cGAGGCGC-GGCUGCacgaUGACcaGGCgcaCGCg -3'
miRNA:   3'- aCUUCGCGuUCGACG----ACUG--CCG---GCGg -5'
26462 5' -57.7 NC_005357.1 + 8672 0.69 0.335817
Target:  5'- ---uGUGCAgcGGCUGCUG-CG-CCGCCc -3'
miRNA:   3'- acuuCGCGU--UCGACGACuGCcGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 9321 0.67 0.397007
Target:  5'- gGcGGCGCAcgucGGCgcgGCgGGCGGCgGCa -3'
miRNA:   3'- aCuUCGCGU----UCGa--CGaCUGCCGgCGg -5'
26462 5' -57.7 NC_005357.1 + 9729 0.68 0.352576
Target:  5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3'
miRNA:   3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 11133 0.69 0.319647
Target:  5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3'
miRNA:   3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 11576 0.67 0.397007
Target:  5'- cGAAGC-CAugccgcccagGGCcGCcGGCuGGCCGCCg -3'
miRNA:   3'- aCUUCGcGU----------UCGaCGaCUG-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.