miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 2007 0.68 0.352576
Target:  5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3'
miRNA:   3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 34713 0.69 0.301023
Target:  5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3'
miRNA:   3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 27494 0.69 0.304068
Target:  5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3'
miRNA:   3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 11133 0.69 0.319647
Target:  5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3'
miRNA:   3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 41435 0.69 0.319647
Target:  5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3'
miRNA:   3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5'
26462 5' -57.7 NC_005357.1 + 14900 0.69 0.319647
Target:  5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3'
miRNA:   3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5'
26462 5' -57.7 NC_005357.1 + 41290 0.69 0.326851
Target:  5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3'
miRNA:   3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5'
26462 5' -57.7 NC_005357.1 + 28527 0.69 0.333354
Target:  5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3'
miRNA:   3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 37320 0.68 0.344123
Target:  5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3'
miRNA:   3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 19026 0.7 0.289079
Target:  5'- gUGGGuGCGguAGCc-CUGguaGCGGCCGCCg -3'
miRNA:   3'- -ACUU-CGCguUCGacGAC---UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 25758 0.7 0.281804
Target:  5'- -uGGGCGC--GCUGCUgGGCGGCgGCa -3'
miRNA:   3'- acUUCGCGuuCGACGA-CUGCCGgCGg -5'
26462 5' -57.7 NC_005357.1 + 15639 0.7 0.281804
Target:  5'- cGAGGUGCuccAGGCcGCUGAuauggcuuacCGGCuCGCCc -3'
miRNA:   3'- aCUUCGCG---UUCGaCGACU----------GCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 3557 0.78 0.077517
Target:  5'- cGAauAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3'
miRNA:   3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34518 0.73 0.169861
Target:  5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3'
miRNA:   3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 23576 0.73 0.179457
Target:  5'- -cAGGUGCGGGCgggggGCgacGAUGGCCGUCa -3'
miRNA:   3'- acUUCGCGUUCGa----CGa--CUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 32523 0.72 0.209481
Target:  5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3'
miRNA:   3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 21174 0.72 0.211175
Target:  5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3'
miRNA:   3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5'
26462 5' -57.7 NC_005357.1 + 18065 0.71 0.234914
Target:  5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3'
miRNA:   3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 28891 0.71 0.247603
Target:  5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACUGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 4271 0.7 0.267693
Target:  5'- --cAGCGCcGGCaUGgUGAUGGCCGUg -3'
miRNA:   3'- acuUCGCGuUCG-ACgACUGCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.