Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26462 | 5' | -57.7 | NC_005357.1 | + | 27824 | 0.66 | 0.454838 |
Target: 5'- ---cGCGCGcGCUGCccGCGGUggCGCCg -3' miRNA: 3'- acuuCGCGUuCGACGacUGCCG--GCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 41387 | 0.66 | 0.454838 |
Target: 5'- cGcGGCGaCAuGCUGCcGcCGGCCGUg -3' miRNA: 3'- aCuUCGC-GUuCGACGaCuGCCGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 1313 | 0.67 | 0.448849 |
Target: 5'- cGAucuuGCGUcugauGGCuuuuucugucagcccUGUuaUGACGGCCGCCa -3' miRNA: 3'- aCUu---CGCGu----UCG---------------ACG--ACUGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 16593 | 0.67 | 0.443891 |
Target: 5'- cGAGGCcgaccacGCGAuGgUGUUGGC-GCCGCCg -3' miRNA: 3'- aCUUCG-------CGUU-CgACGACUGcCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 27572 | 0.67 | 0.435045 |
Target: 5'- -aAGGCGCccAGCgUGCggcGCuGGCCGCCa -3' miRNA: 3'- acUUCGCGu-UCG-ACGac-UG-CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 32346 | 0.67 | 0.425337 |
Target: 5'- cGccGCcCAGGUcGCUG-CGGUCGCCg -3' miRNA: 3'- aCuuCGcGUUCGaCGACuGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 38170 | 0.67 | 0.41576 |
Target: 5'- ----aUGCcGGC-GCUGACGGCCGgCa -3' miRNA: 3'- acuucGCGuUCGaCGACUGCCGGCgG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 7414 | 0.67 | 0.41576 |
Target: 5'- uUGAAGC-CGGGCaccgGAUGGCCgGCCa -3' miRNA: 3'- -ACUUCGcGUUCGacgaCUGCCGG-CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 32680 | 0.67 | 0.41576 |
Target: 5'- gUGAAGCcCGAGCaguucGCcGACGuGCuCGCCg -3' miRNA: 3'- -ACUUCGcGUUCGa----CGaCUGC-CG-GCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 25250 | 0.67 | 0.41576 |
Target: 5'- cGAAGCGCAccuGUUGCUcGC-GCUGCUc -3' miRNA: 3'- aCUUCGCGUu--CGACGAcUGcCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 14624 | 0.67 | 0.406315 |
Target: 5'- ---cGCGCGAGgacgUGCUG-CGGCUGCg -3' miRNA: 3'- acuuCGCGUUCg---ACGACuGCCGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 24143 | 0.67 | 0.406315 |
Target: 5'- cGucGC-CAccGGCccGCUGACGGCCGgCa -3' miRNA: 3'- aCuuCGcGU--UCGa-CGACUGCCGGCgG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 18570 | 0.67 | 0.406315 |
Target: 5'- gGAGGC-CGcGCUcGCggUGACGGCCugGCCg -3' miRNA: 3'- aCUUCGcGUuCGA-CG--ACUGCCGG--CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 11576 | 0.67 | 0.397007 |
Target: 5'- cGAAGC-CAugccgcccagGGCcGCcGGCuGGCCGCCg -3' miRNA: 3'- aCUUCGcGU----------UCGaCGaCUG-CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 27416 | 0.67 | 0.397007 |
Target: 5'- cGucGCGCGccuGGCgcaccGCgcccGGCGGCCGCa -3' miRNA: 3'- aCuuCGCGU---UCGa----CGa---CUGCCGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 9321 | 0.67 | 0.397007 |
Target: 5'- gGcGGCGCAcgucGGCgcgGCgGGCGGCgGCa -3' miRNA: 3'- aCuUCGCGU----UCGa--CGaCUGCCGgCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 34997 | 0.67 | 0.396084 |
Target: 5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3' miRNA: 3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 20297 | 0.68 | 0.387837 |
Target: 5'- --cAGUaGCGGGUUGCUcGGCGGCCGg- -3' miRNA: 3'- acuUCG-CGUUCGACGA-CUGCCGGCgg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 20256 | 0.68 | 0.387837 |
Target: 5'- cUGGgucGGCuGUu-GCUGCUGuuGGCCGUCg -3' miRNA: 3'- -ACU---UCG-CGuuCGACGACugCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 6369 | 0.68 | 0.387837 |
Target: 5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3' miRNA: 3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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