miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 30391 0.66 0.549128
Target:  5'- gUCGGUGAuaACggcGUCCACGCUuucgcucggcauggCGAugAGCg -3'
miRNA:   3'- aAGCCGCU--UGa--CAGGUGCGG--------------GCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 30496 0.68 0.42782
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26463 3' -56.4 NC_005357.1 + 30612 0.67 0.530684
Target:  5'- aUCGGCGAuCUGUUCuuGCgaccagCCGgcGCg -3'
miRNA:   3'- aAGCCGCUuGACAGGugCG------GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 30882 0.68 0.456495
Target:  5'- -cCGGCGGGCaGUCCuaucaggAUGCCCGcucGCa -3'
miRNA:   3'- aaGCCGCUUGaCAGG-------UGCGGGCuu-CG- -5'
26463 3' -56.4 NC_005357.1 + 31004 0.7 0.321421
Target:  5'- -aCGcGCGAcCUGUCCACGggcuugccggCCGAGGCa -3'
miRNA:   3'- aaGC-CGCUuGACAGGUGCg---------GGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 31837 0.7 0.336049
Target:  5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3'
miRNA:   3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32127 0.66 0.563365
Target:  5'- -cUGGCGAAgUGg-CAC-CCCGAGGUg -3'
miRNA:   3'- aaGCCGCUUgACagGUGcGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32635 0.68 0.42782
Target:  5'- -gCGGUc-GCUGUCCugucgaaguucgGCGCCgCGAAGCu -3'
miRNA:   3'- aaGCCGcuUGACAGG------------UGCGG-GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32830 0.66 0.541507
Target:  5'- -aCGuCGAACU---CACGCCCGAGGUg -3'
miRNA:   3'- aaGCcGCUUGAcagGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32867 0.69 0.380987
Target:  5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3'
miRNA:   3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5'
26463 3' -56.4 NC_005357.1 + 32936 0.7 0.363236
Target:  5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3'
miRNA:   3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5'
26463 3' -56.4 NC_005357.1 + 33394 0.66 0.578805
Target:  5'- gUUCGGCuuuacgucuggugacGAACUGgugcgCCGCcuGCUgGAAGCg -3'
miRNA:   3'- -AAGCCG---------------CUUGACa----GGUG--CGGgCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 33496 1.08 0.0006
Target:  5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3'
miRNA:   3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 34415 0.66 0.574383
Target:  5'- -cCGGCGaAGCUGgcgCCaagggcACGUCCGAcGCc -3'
miRNA:   3'- aaGCCGC-UUGACa--GG------UGCGGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 34998 0.66 0.585451
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 39172 0.66 0.574383
Target:  5'- -cUGGCGcggaAGCUGaaUCC-CGCCgGggGCu -3'
miRNA:   3'- aaGCCGC----UUGAC--AGGuGCGGgCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 39673 0.68 0.447484
Target:  5'- gUCGGCagug-GUCggCACGCCCGAgcAGCg -3'
miRNA:   3'- aAGCCGcuugaCAG--GUGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 41597 0.67 0.477891
Target:  5'- gUCGGCucGCUGUCUcuGCGCgCGcucAAGCc -3'
miRNA:   3'- aAGCCGcuUGACAGG--UGCGgGC---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.