miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 33394 0.66 0.578805
Target:  5'- gUUCGGCuuuacgucuggugacGAACUGgugcgCCGCcuGCUgGAAGCg -3'
miRNA:   3'- -AAGCCG---------------CUUGACa----GGUG--CGGgCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 24597 0.66 0.585451
Target:  5'- -gUGGCGGGCaucaaCC-CGCCCGAGGg -3'
miRNA:   3'- aaGCCGCUUGaca--GGuGCGGGCUUCg -5'
26463 3' -56.4 NC_005357.1 + 34998 0.66 0.585451
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 5154 0.68 0.447484
Target:  5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3'
miRNA:   3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 30496 0.68 0.42782
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26463 3' -56.4 NC_005357.1 + 4626 0.68 0.418182
Target:  5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3'
miRNA:   3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5'
26463 3' -56.4 NC_005357.1 + 26428 0.74 0.180248
Target:  5'- -cCGGCGAcCUGUCCcuGCGCgCGgcGCa -3'
miRNA:   3'- aaGCCGCUuGACAGG--UGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 13207 0.73 0.223866
Target:  5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3'
miRNA:   3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5'
26463 3' -56.4 NC_005357.1 + 9750 0.72 0.254802
Target:  5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3'
miRNA:   3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5'
26463 3' -56.4 NC_005357.1 + 19805 0.71 0.290637
Target:  5'- aUCaGCGAcuaccuGCUG-CCGCGCgCGggGCg -3'
miRNA:   3'- aAGcCGCU------UGACaGGUGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 15157 0.71 0.30343
Target:  5'- -gCGGCGAACUgcgGUUCAUugccucggccaagaGCCUGggGCg -3'
miRNA:   3'- aaGCCGCUUGA---CAGGUG--------------CGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 29479 0.71 0.313502
Target:  5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3'
miRNA:   3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 31837 0.7 0.336049
Target:  5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3'
miRNA:   3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32936 0.7 0.363236
Target:  5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3'
miRNA:   3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5'
26463 3' -56.4 NC_005357.1 + 20023 0.69 0.37204
Target:  5'- -cUGGCGAAC-GUCaCGCGCuuGAuGCu -3'
miRNA:   3'- aaGCCGCUUGaCAG-GUGCGggCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 11190 0.69 0.380987
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 28951 0.69 0.399308
Target:  5'- gUCGGCaucGCccagGUcaugcccgacaCCGCGCCCGAGGCc -3'
miRNA:   3'- aAGCCGcu-UGa---CA-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 33496 1.08 0.0006
Target:  5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3'
miRNA:   3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.