miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 30496 0.68 0.42782
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26463 3' -56.4 NC_005357.1 + 32127 0.66 0.563365
Target:  5'- -cUGGCGAAgUGg-CAC-CCCGAGGUg -3'
miRNA:   3'- aaGCCGCUUgACagGUGcGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32830 0.66 0.541507
Target:  5'- -aCGuCGAACU---CACGCCCGAGGUg -3'
miRNA:   3'- aaGCcGCUUGAcagGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 4626 0.68 0.418182
Target:  5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3'
miRNA:   3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5'
26463 3' -56.4 NC_005357.1 + 34998 0.66 0.585451
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 28951 0.69 0.399308
Target:  5'- gUCGGCaucGCccagGUcaugcccgacaCCGCGCCCGAGGCc -3'
miRNA:   3'- aAGCCGcu-UGa---CA-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 11190 0.69 0.380987
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 3852 0.7 0.363236
Target:  5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3'
miRNA:   3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 34415 0.66 0.574383
Target:  5'- -cCGGCGaAGCUGgcgCCaagggcACGUCCGAcGCc -3'
miRNA:   3'- aaGCCGC-UUGACa--GG------UGCGGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 14817 0.66 0.574383
Target:  5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3'
miRNA:   3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5'
26463 3' -56.4 NC_005357.1 + 8529 0.68 0.461544
Target:  5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3'
miRNA:   3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5'
26463 3' -56.4 NC_005357.1 + 39673 0.68 0.447484
Target:  5'- gUCGGCagug-GUCggCACGCCCGAgcAGCg -3'
miRNA:   3'- aAGCCGcuugaCAG--GUGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 3080 0.68 0.437589
Target:  5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3'
miRNA:   3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 27977 0.68 0.437589
Target:  5'- cUCGGUGGGCUGggCCAUcaggcuguaGCCgaUGAGGCg -3'
miRNA:   3'- aAGCCGCUUGACa-GGUG---------CGG--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 24649 0.7 0.363236
Target:  5'- -cCGGCGGGCcaggauggUGUugUCGCGCCCGccGCg -3'
miRNA:   3'- aaGCCGCUUG--------ACA--GGUGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 28379 0.66 0.540422
Target:  5'- cUUGGCGAGgUGUUCcaguucgACGCCgGcGGCg -3'
miRNA:   3'- aAGCCGCUUgACAGG-------UGCGGgCuUCG- -5'
26463 3' -56.4 NC_005357.1 + 30391 0.66 0.549128
Target:  5'- gUCGGUGAuaACggcGUCCACGCUuucgcucggcauggCGAugAGCg -3'
miRNA:   3'- aAGCCGCU--UGa--CAGGUGCGG--------------GCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 26053 0.66 0.552403
Target:  5'- -gCGGCGGGCgcgcUCCAUGCgcucggcgaacUCGggGCg -3'
miRNA:   3'- aaGCCGCUUGac--AGGUGCG-----------GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 804 0.66 0.552403
Target:  5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3'
miRNA:   3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 27417 0.66 0.563365
Target:  5'- gUCGcGCGc-CUGgcgcaCCGCGCCCGGcGGCc -3'
miRNA:   3'- aAGC-CGCuuGACa----GGUGCGGGCU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.